KEGG T01360: LDBND

Lactobacillus delbrueckii subsp. bulgaricus ND02: LDBND_0556

Entry

LDBND_0556        CDS       T01360

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

lde Lactobacillus delbrueckii subsp. bulgaricus ND02

Pathway

lde03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:lde00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LDBND_0556
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lde03400]
    LDBND_0556
DNA repair and recombination proteins [BR:lde03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LDBND_0556
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LDBND_0556

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 Kinesin AAA SLFN-g3_helicase AAA_22 AAA_7 PepSY DUF1351 AAA_5 Microtub_bd Arm-DNA-bind_5

Other DBs

NCBI-ProteinID:

ADQ60605

Position

568499..570541

AA seq 680 aa
MIKRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAK
MNKPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASI
NDEIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRD
LVNIQYDRNDIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVH
GVRDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLE
MLREVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDR
NRKQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSRIVEQVIRPT
GLLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYL
HSDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLI
QTMGRAARNANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDM
ISVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLNEQMQDAAKRLDFESAANLRDAII
ELEGSVRKPIKKKGKDFNGR

NT seq 2043 nt +upstreamnt +downstreamnt
gtgattaagcggcaagacaataacaaatttgaactcgtctcaccatataagccggccggt
gaccagcagcaggccatcgaccagctgacggccggttttcaagccggcgataaagagcag
atcctcaagggggcaacggggacggggaagacctataccatggccaatgtaattgccaaa
atgaacaagccgaccctggtcattacccacaacaagaccctggttggccagctctacaat
gaatttaaggaatttttcccgaacaacgccgtggaatacttcgtttcctactatgactac
taccagccggaagcctacgtgccccagtcagacacttacattgaaaaagacgcctcgatc
aacgacgaaatcgaccagctgcggcacgccgccaccagcgccttgatgtccagaaatgac
gtcatcgtggtggcttccgtttcctgtatatacggcttgggtgacccaagagaatacgcg
gccagcgtgttaaacgtctatactggccaggaatacgaaagaaacaccctgctcagagac
ttggtcaacatccagtacgacagaaacgacatcgacttccagcggggccgcttccgggtc
cggggcgacgtcgtggaagttttcccggccggctattctgaccgggcctaccggattgaa
ttttttggcgacgaaatcgaccggattgtcgaagttgaccccttgaccggggaagtgcac
ggggtcagagacagcatctcccttttcccggccacccacttcatgaccaacgatgatcag
ctggccggggctatcgaccggatcaaggctgagatggacgaccaggtcaagaagtttgaa
aaagaaggcaagctgctggaggcagaaagaatcaagcagcggaccacctacgacttggaa
atgctgagagaagtcggctacaccaacgggattgaaaactactcccggcagatggaaaac
cgcaaagctggtgagccgccatacacccttttggacttcttccccaaggattccctgatt
ttaatcgacgaatcccacgctaccatgccggaaatccgggccatgtataacggggacaga
aacagaaagcagaccttgattgactatggcttccgcctgccatcagccttggacaaccgg
cccctaaagctggaagaatttgagcagcatgtcaaccagatcatgtatgtgtcagccacc
ccgggtgactatgaattaaaccagactagccggatcgtggaacaggtcatccggccgacc
ggccttttggacccgaagatcgaggtccggccaattgaagggcagatcgatgacttggtt
gctgaaatcaacctgcggattgaaagaaaggaacgggtttttgtcactactttgaccaaa
aagatggctgaagacttgaccgactacttgaaagacctgggcatcaaggtccgctacctg
cactcggacattaaaaccctggaaagaatgcagatcatccgcgacctccgcttgggcaag
tttgacgttttgatcgggatcaacttgcttagggaagggatcgacgtaccggaagtttcc
ctggtggccattctggacgcggacaaggaaggcttcctgcgggcctaccggccgctgatc
cagaccatgggccgggcggcccggaacgccaacggtgaagttatcatgtatgctgaccgg
atcaccgattccatgaagctggcgattgatgaaacgaaccgccgccgggccatccagatg
aagtacaatgaagagcatgggatcgtgccaaagaccatcatcaagccggtccgggatatg
atctccgtggtcaaggccgacaaggaagccgaaaagtcagactccttcgccgacctcaac
ttcgacgagctgacggccaagcagaagaagcagatgatcgccaacttgaacgagcagatg
caagacgcggccaagcgcttggactttgaaagcgcggctaacctccgcgacgcgattatc
gaattggaaggctctgtaagaaaaccgattaagaagaaaggcaaggacttcaatggcaga
tag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (24)   

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