KEGG   Leishmania donovani: LDBPK_230600
Entry
LDBPK_230600      CDS       T02289                                 
Name
(RefSeq) 5'-3' exonuclease XRNC, putative
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ldo  Leishmania donovani
Pathway
ldo03008  Ribosome biogenesis in eukaryotes
ldo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ldo00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    LDBPK_230600
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LDBPK_230600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ldo03021]
    LDBPK_230600
   03019 Messenger RNA biogenesis [BR:ldo03019]
    LDBPK_230600
   03009 Ribosome biogenesis [BR:ldo03009]
    LDBPK_230600
   03016 Transfer RNA biogenesis [BR:ldo03016]
    LDBPK_230600
Transcription machinery [BR:ldo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     LDBPK_230600
Messenger RNA biogenesis [BR:ldo03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     LDBPK_230600
Ribosome biogenesis [BR:ldo03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    LDBPK_230600
Transfer RNA biogenesis [BR:ldo03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    LDBPK_230600
SSDB
Motif
Pfam: XRN_N XRN_M
Other DBs
NCBI-GeneID: 13389922
NCBI-ProteinID: XP_003860961
UniProt: E9BG80
Position
23:205870..209076
AA seq 1068 aa
MGVPLLLTWLRKRFADCFMPADSAVTDYIRESTDNLFIDLNSFLYQAATIITATHRSLRF
DSVDEVEDVVLRKLFDLLDDLVMNLVQPKALVYIAVDGVSPLGKMSQQRARRRRGARRQP
SASSSSPSRHHEPAGNINDLWDSNCISVGTRFMAKVTEALHFYAVSRTERINAKRLREER
VRIDKADASVDSAAGDSAGAPYVFPFLSIIVDDVLRPGEGENKIAEFIRRIRADPSYGPN
TSHVICSSDTDVTVTSLILHEPRIHVLRYEPPVSLGGKLPMKSQPPPQHHHHHRSHHQHV
RFSSHPHRGSGPSSHGPRRVDGRSGHAHHGAPRPSPRHGAGAAAQPPPPKDSWLSTFFSI
HVFRQRLRGILHLSPSSDAASALAGAAVPSVDAEEAALTFEHALHDVVFVLLLFGNDFLP
TIGGSIQEGTLDALLSLLATDFVPRGRTLVDPATNRIQYASARYLLSCLAELPGNAKKGG
SGGRLQVHNGGSDALDWGFTAEKEAKERDPAFIERQQRREKQHERMCYCYWTMLQWALQY
SAGIVEHWGCYYPYGRAPPLSKLATYCGVLTYSALGEIARRRLEMNAAAGRATSSIDGEV
GNANEEEDDDDAMDGLPTSVLQAGEAGTAVVDAAERGKPTDVMVQLLILIPPRSVALLPT
VFRHHYKEVEAAVQAPVEQLNLVSIGAWCEEKKRSLSEEERTRFTAYQFFASDADLGTAE
APFPARDIAFTAYWNGPAVEAELAALRVSKKAAISAAAGITFTAGATSSTSAAGLQSRAA
SFFSMGRRPASGTSSNGGAAALLATINITSARASPPPAPATAEIATPLEETPASPSTEAT
PALQQQHQPVKLQHPAGDYVLWVVPCDALQDALMVKALGTVHGNRFCVGSYVPLVEQDAV
LSRSGGPRQEVRLQFRLAVAPMITDTTYGARLLSGYEEPAEVGMRERIAEARKEEADRAD
PWKQLDKMQTLRQERKRARDVENVHASGEGELDGDLAHAAPPSAGDDGQMPQEVELQERP
PPQQVTVDTVDSTVQVADAEALLKLRKEEARRRLTALKAARQAAQQDE
NT seq 3207 nt   +upstreamnt  +downstreamnt
atgggtgtgccgctgctcttgacctggctgcggaagcgttttgctgactgcttcatgcca
gccgacagcgcggtcaccgactacatccgcgaaagcacagacaacctttttattgatctc
aactccttcttgtaccaggccgccaccatcattacggcgacgcaccgctcgctccgcttc
gactcggttgatgaagtggaggatgtagtgctgcgcaagctgtttgacctcctcgacgac
ctcgtcatgaacctcgttcagcccaaggcgctggtgtacatcgcggtagatggcgtatcg
ccactgggcaagatgtcgcagcagcgtgcgcggcggcgtcgtggagcgcgccggcagccg
tccgcctcgtcgtcttcgccttctcgccatcacgagccggcgggcaacatcaacgacctg
tgggacagcaactgcatcagcgtcgggacgcgcttcatggccaaggtgacggaggcgcta
cacttttacgccgtgagcaggacagaacgaatcaacgcgaagcgacttcgcgaagagcgg
gtccgcattgacaaggccgacgcgtcagtggactctgccgccggcgactccgccggcgcg
ccgtacgtgttccccttcctcagcatcattgtcgacgatgtgctgcgccccggcgagggc
gagaacaagatcgccgagttcatccgccgcatccgcgctgatccgagctacggcccgaac
acgtcgcacgtcatctgcagctccgacacggacgtcaccgtaaccagcctaatcctgcac
gagccacgcatccatgtcctgcgctacgagccgccagtctcgctgggaggtaagctgccc
atgaagtctcagccaccgcctcagcatcaccatcatcaccgcagccaccaccagcacgtg
cgtttctcctctcatccacatcgcggcagtggtccttcgtcgcacgggccccgtcgggtc
gacggacggagcggccatgcgcatcacggcgcaccacgcccctctccgcgccacggcgcc
ggtgccgctgcgcagccaccgcccccgaaagacagctggctctccaccttctttagcatt
cacgtctttcggcagcggctgcgtggcatccttcatttgtcaccaagcagcgacgccgct
tccgccctcgcgggcgccgctgtgccctcggtggacgccgaggaagccgccctcaccttt
gagcacgccctgcacgatgttgtcttcgtgttgctgctcttcggcaacgacttcctgccc
accatcggcggaagcatccaggagggcacgttggatgcgctgctctcgctgctggcgacc
gactttgtgccgcgtgggcgcaccttggtggacccggcaacaaaccgcatccagtatgcg
tctgcacgctacctgctcagttgcctggcggagctgccaggcaatgcaaagaaaggtgga
agtggaggtcgtctgcaggtgcacaacggcggctccgacgcgctggactggggcttcaca
gccgaaaaagaagcgaaggagcgcgaccccgcctttatcgagcggcagcagcggcgcgag
aagcagcatgagcgcatgtgctactgctactggacgatgctgcagtgggcactgcagtac
agcgccggcattgtggagcactggggctgctactacccgtacggcagggcaccccccttg
tcaaagcttgccacatactgcggtgtgctcacctacagcgcactcggggagattgcgcga
cggcgactggagatgaacgccgccgctgggcgtgccacgagtagcatcgatggcgaggtc
ggaaacgccaacgaggaggaggacgatgacgacgccatggacgggcttccgacgtcagtg
ctgcaggccggggaggctggcacggcggtggtcgatgctgcagagcgaggcaagccgacg
gatgtgatggtgcagctgctgatccttatccctccgcgcagtgtggcgctgctgcccact
gtctttcggcatcactacaaggaagtcgaggcggctgtgcaagcgcccgtggagcagctg
aacctagtgtccatcggtgcctggtgcgaggagaagaagcggtcgcttagcgaggaagag
cggacgcgcttcacagcgtaccagttcttcgcctccgacgccgatctcggcaccgccgag
gcaccgtttcccgcgcgagacatcgcctttaccgcctattggaacggccctgccgtcgag
gcggagttggcagcgctgcgggtgagcaagaaggcagcaataagtgctgccgctggcatc
accttcacggccggcgccacgtcgtccacttcggcggcgggactgcagagtagggccgcc
tcctttttcagcatgggtcgtcggccggcttccggcacctcaagcaatggcggcgcagca
gcactcttggcaacaatcaacatcacaagcgcacgtgcctcgccgccaccggcgccggcc
acggcggagattgcgacgccactcgaagagacgcctgcaagcccgtcgactgaagcaact
ccggcactgcagcagcagcatcagcccgtaaagctgcagcacccagcaggcgactacgta
ctctgggtggtcccatgcgacgctctgcaagacgcgctgatggtcaaggcgctgggtacg
gtgcacgggaaccgcttctgcgtgggcagctacgtgccgcttgtggagcaagacgccgta
ctcagtcgcagcggtgggccacggcaggaagtgcggctgcagttccgcctggctgtggcc
ccaatgatcacggacacaacgtacggggcgcgcctgctgtcggggtacgaggagccggcg
gaggtgggcatgcgcgagcggatcgcggaagcgagaaaagaggaagccgaccgggccgat
ccgtggaagcagctggacaagatgcagacgctgcgacaggaacgcaagcgtgcccgcgac
gtcgagaacgtacacgcgtctggtgaaggggagctagacggcgaccttgcgcacgctgca
ccgccgagcgccggcgatgatggccagatgccgcaggaggtagagctgcaggagcggccg
ccgcctcaacaggtgacggtcgacactgtggactctacagtgcaggtggccgatgcggaa
gcgcttctgaaacttcgcaaggaggaagcgcggcgacggttaactgccttgaaggctgct
cggcaggccgcgcagcaggacgagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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