KEGG   Lapidilactobacillus dextrinicus: LH506_04890
Entry
LH506_04890       CDS       T06302                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ldx  Lapidilactobacillus dextrinicus
Pathway
ldx03410  Base excision repair
ldx03430  Mismatch repair
ldx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ldx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LH506_04890 (recJ)
   03430 Mismatch repair
    LH506_04890 (recJ)
   03440 Homologous recombination
    LH506_04890 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ldx03400]
    LH506_04890 (recJ)
DNA repair and recombination proteins [BR:ldx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     LH506_04890 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     LH506_04890 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LH506_04890 (recJ)
SSDB
Motif
Pfam: ssDNA-exonuc_C DHH RecJ_OB DHHA1 Phage_TAC_4
Other DBs
NCBI-ProteinID: QFG46823
Position
962012..964393
AA seq 793 aa
MQEYWQKPPTIDSKLVTNLAAQLGLPESVLAILVGRGYDTADKITEFLATDLGNLTTPDH
FYDLDKAVARIESAIENDEKITVYGDYDADGVTSTSIMVEALATLGIEATYYIPSRFTDG
YGPNMDRYHEIVADGTQLLITVDNGISGAAEVEYAQSQGVDVIVTDHHDLPAELPAAFAV
VHPRHPQSNCQFSYFSGAGVAFYLAWGLLGELPVELLDLVAIGTVADVMPLVADNRILVA
NGLRQMQASERLGLVALAKQAKLDLNHVTAHDIGFKLAPRLNSLGRVNSGRPAVELLTTF
DDETATKIATDTEKTNQQRQQLVQEVVDKVAAELATVTAPPALVVAGENWAEGVLGIVAS
RLVDQYHCPTIVLSINPATQQAKGSGRSIGEFDLFAALDDFREQMINFGGHAGAIGLTVA
TDKVAELRDHLIAKAAQQQEQIQATGQQQIDAVFTAQNITKLTPDSVQAVSEILEPYGES
NPEPIVALKNLQWQQWQAIGQTKQTLKGTLNNTISGIAFRQGELAQQLQATSQVTAIGQL
GLNRWQGKTTVQLQIKDFILPTEAPQTDQVQLSQPVPQSQSKPSGASPISTDVELIDWRQ
QKLDRTIWQTPRQYVCFNEKLAHQLQQRFTSSSRITTLDQLAADHQELLFVDLPTDIRLF
TRYLSSTNAQRIYLMFYTSPAMKERLQMQIPQLRNLLKEIYQQKTVLVSELAQFAQHCGI
TMQQLRFGLSVFSELNFVKINKEQITAQPQMPKRQLSDSQTFMRQQSLQKSYRELAVGDL
TQIKTFLKSSQSR
NT seq 2382 nt   +upstreamnt  +downstreamnt
ttgcaagaatattggcaaaagccaccaacaattgattcaaaattagtcactaatttagct
gcacaactaggattgccagaatcagttctggctattttagttggccgtggttatgataca
gcagataaaatcaccgaatttttagcaacagatttgggtaatttgacaacacctgatcat
ttttatgacttggataaagctgttgcacgaattgaaagtgcgattgaaaacgatgagaaa
attacggtctacggcgattatgatgccgatggtgtaaccagtacatccattatggttgaa
gcgctggcaaccttaggcatagaggcgacttattatattcctagtcgctttactgatggc
tacgggcctaacatggaccgctatcacgaaattgttgcggatggtacgcagctgttaatt
accgttgacaatggtatctctggcgcggccgaggttgaatatgctcaaagtcagggggtc
gatgtcattgtcactgatcaccatgatttacctgctgaattacccgcagcatttgcggta
gtccatccgcgccatccacaatcaaattgtcagtttagctatttttctggcgctggggta
gctttttatctagcctggggattattaggtgagttaccagttgaattattagacctagtc
gcaattggaacggtggctgatgtgatgccattagtagctgataatcgtattttagtagca
aatggtttacggcaaatgcaagctagcgaacgtttgggcttagtagcattagccaagcaa
gccaagttggatttaaatcatgtcacagctcacgatattgggttcaagttagcgccacgc
ttaaattcgctcggtcgcgttaatagtggtcggccagcggttgaattattaacaacgttt
gatgatgaaacggcaacaaaaattgccactgatactgaaaagaccaatcaacagcgacaa
caattggtccaagaagtcgtcgataaagttgcggcagaattagctactgtgactgcacca
ccagcattagtagtcgctggtgagaattgggccgagggtgttttagggattgttgccagt
cgcttagttgatcaatatcattgcccaacaattgttctgagtattaatccggcaactcag
caagccaagggttctggacgttcaattggcgagtttgatttatttgcagcacttgatgat
tttcgggagcaaatgattaattttggcggccatgctggtgcaattggcttaaccgtggca
actgataaagttgctgaattgcgcgaccatttgattgctaaagcagcccaacaacaagaa
caaattcaagccactggtcagcaacagattgatgctgtttttacagcacaaaatattacc
aaattaacacctgattctgttcaagctgttagtgagattttagagccttatggtgaaagc
aatccagaaccgattgttgctttaaaaaatctacagtggcaacaatggcaagcaattgga
cagacgaaacaaacgctcaagggaactttaaacaatactattagcggaattgcctttcgc
cagggtgagttagcacaacaattacaagccacttcgcaagtaactgctattggccagttg
ggcttaaatcgctggcagggtaaaacaactgttcaattacaaattaaggacttcatctta
ccaacggaagcgccacaaactgatcaagtacaattaagccagccagttccacagtctcag
tcaaagccaagtggcgcttcaccgatcagtactgatgttgaattaattgactggcgccag
caaaaattagatcgaacgatttggcaaacaccacgtcaatatgtctgttttaatgagaaa
ttagctcatcagttgcagcaacgattcactagttcatcacgaattaccactttagaccaa
cttgcagcagatcatcaggaattacttttcgttgatttaccaacagatattcgcttattc
actcgatatttaagtagcactaatgcccaacgaatttatttaatgttctatacatcccca
gcgatgaaagaacgattacaaatgcaaattccgcaactaagaaatttacttaaagaaata
tatcaacagaaaaccgttttagtgtccgaattagcacagtttgcacaacattgcgggatt
acaatgcagcagcttcgttttggattaagcgtgttttctgagttaaactttgttaaaata
aataaggaacagattaccgcccaaccgcaaatgcctaaacggcagctctctgactcacag
acctttatgcgacaacaatcgttacaaaagagttatcgtgagttagcagttggcgatttg
acgcagatcaaaacgttccttaaatcaagtcaaagcagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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