KEGG   Leifsonia sp. PS1209: HF024_04625
Entry
HF024_04625       CDS       T06547                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
leif  Leifsonia sp. PS1209
Brite
KEGG Orthology (KO) [BR:leif00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:leif03032]
    HF024_04625 (topA)
   03400 DNA repair and recombination proteins [BR:leif03400]
    HF024_04625 (topA)
Enzymes [BR:leif01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     HF024_04625 (topA)
DNA replication proteins [BR:leif03032]
 Prokaryotic type
  DNA Topoisomerases
   HF024_04625 (topA)
DNA repair and recombination proteins [BR:leif03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HF024_04625 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim HC2 Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: QIZ97872
UniProt: A0A6H1W2G0
Position
949656..952475
AA seq 939 aa
MSDTKKLVIVESPNKVKSIAQYLGDGYEVMASVGHIRDLIEPKNLPPELKKGSLGKFSVD
VEKGFEPYYVVSDQKKKTVADLKRALKNADELLLATDEDREGEAIAWHLIEVLQPKVPVK
RMVFHEITKEAIEKARDNTREIDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVPASYWGLTAHFTPEEANGFEARLARLSGERVATGRDFDDH
GKLTSNARTLDEETATSLAAAISQPSTVVTVGKVDSKPYSRRPAAPFTTSTMQQEAARKL
RFSAKQTMSVAQSLYESGYITYMRTDSASLSQQATNAARTQAAKLYGPETVPDKPRTYAS
KSKNAQEAHEAIRPSGEVFRTPAELEKVLRGNEFRLYDLIWKRTVASQMADAKGQTASVT
VETKITEGVHDGTVGEFTASGTVITFRGFLNAYEESKDEERNSSDSADAKLPPLQVGQEL
HVQDVEADGHETTPPPRYTEASLVKALEELGIGRPSTFASIISTIVDRGYVTPRGQALVP
SWVAFSVVRLLEDYFGDLVQYDFTAEMEDDLDRIADGEAERVDWLNSFYFGSDKHTGLRR
VIDNMGEIDARSINSIAIDDDVTLRIGKYGPYLEVAEEGAAEGATPRRVNIPPELAPDEL
TPAKAHELIEAPVLTDRVLGVNPENGKNIVAKDGRFGPYVTEIDPEEAAAETVDQATGEV
VAAPAKKPAKKAAAAKPRTASLFKSMDLATLDLDTALQLLDLPRTVGIDPESGEEIQAQN
GRYGAYLKKGTDTRSLTNEDDIFGIDLAGALELFAQPKYGNRRASSALKEFDADPVSGKA
IKVKDGRFGPYVTDGETNATIPRGETVDEVDFERAVQLLADKRAKGPAKKAPAKKAPAKK
APAKKPAAKTTAAKTTAAKTTAAKTTTTRKAAATKPAAE
NT seq 2820 nt   +upstreamnt  +downstreamnt
gtgtctgacacgaagaaactcgtcatcgtcgagtcaccgaacaaggtgaagtcgatcgct
cagtatctgggtgacggctacgaggtgatggcatccgtcggacacatccgcgacctcatc
gagcccaagaaccttccgcccgagctcaagaagggctcgctcggcaagttctccgtcgac
gtcgagaagggcttcgagccctactacgtggtctccgaccagaagaagaagaccgtcgcc
gacctcaagcgggcgctcaagaacgccgacgaactcctcctcgcaacggatgaggaccgc
gaaggagaggccatcgcgtggcacctcatcgaggtgctgcagccgaaggtccccgtgaag
cggatggtgttccacgagatcaccaaagaagccatcgagaaggcacgggacaacaccaga
gagatcgacaccgcgctggtcgacgcccaggagaccaggcgcatcctggaccggctgtac
gggtacgaggtctcgcccgtgctgtggcgcaaggtcggccctggactgtccgccgggcgt
gttcagtccgccgcgaccaggctcgtcgtcgacagggagcgcgagcgtctcgcgttcgtc
cctgcctcgtactggggcctgaccgcacacttcacgccggaagaggcgaacggtttcgag
gccaggctcgcccggctgtccggcgagcgcgtcgccacagggcgcgacttcgacgaccac
ggaaagctcacgtccaacgcgcgcaccctggacgaggagaccgcgaccagcctcgccgcc
gccatctcgcagccgagcaccgtcgtcacggtcggcaaggtcgactccaagccgtactcc
cgccgcccggccgcgccgttcaccacgtcgaccatgcagcaggaggccgcgcgcaagctg
cgcttctccgcgaagcagacgatgagcgtcgcacagtcgctgtacgagagcggctacatc
acctatatgcgaaccgactccgcttcgctctcccagcaggccaccaacgcggcccgcacc
caggccgccaagctctacggaccggagacggttcctgacaagccgcgcacatacgcctcg
aagagcaagaacgcccaggaggcgcacgaggcgatccgcccgtccggtgaggtcttccgc
acgcccgccgagctcgagaaggtgctccgcggcaacgagttccgcctgtacgacctgatc
tggaagcgcaccgtcgcctcgcagatggccgatgccaagggacagaccgcctccgtcacg
gtcgagacgaagatcaccgagggcgtccacgacggcaccgtcggcgagttcaccgcgagc
ggcaccgtcatcacgttccgcggcttcctcaacgcatacgaggagagcaaggacgaagag
cgcaactcgtccgattccgccgacgccaagctgcctccgctgcaggtcggccaggagctg
cacgtccaggatgtggaggccgacggccacgagaccaccccgccgccgcgctacacggag
gccagcctcgtcaaggcgctcgaagagctgggcatcggccggccgtcgacgttcgcgagc
atcatctccacgatcgtcgaccgcgggtacgtcacgccccgcggccaggcactcgtcccg
agctgggtggcgttctccgtcgtccggctgctggaggactacttcggtgacctggtgcag
tacgacttcaccgccgagatggaagacgacctcgaccgcatcgccgacggcgaggccgag
cgcgtcgactggctgaacagcttctacttcggcagcgacaagcacaccggcctgcgccgc
gtcatcgacaacatgggtgagatcgacgcgcgcagcatcaactcgatcgccatcgacgac
gacgtgacgctgcggatcggcaagtacggcccatatctcgaagtcgccgaagaaggcgcg
gcagaaggggcaacgccccgccgggtgaacatcccgccggagctcgcccccgacgagctg
acgcccgcgaaggcgcacgagctcatcgaagcgcccgtcctcaccgaccgtgtcctcggc
gtgaaccccgagaacggcaagaacatcgtcgcgaaagacggccggttcgggccgtacgtg
accgagatcgacccggaagaggccgctgcggagaccgtcgaccaggccacgggagaagtc
gtcgccgctccggccaagaagccggcgaagaaggcagcggccgcgaagccgcgcacggcg
tccctgttcaagtcgatggatctcgcgaccctcgacctcgacaccgccctgcagctgctc
gacctgccgcgcacggtcgggatcgaccccgagagcggggaagagatccaggcccagaac
ggacggtacggcgcatacctcaagaagggcacggacacccgttcgctgaccaacgaggac
gacatcttcggcatcgacctggcgggggcgctcgaattgttcgcgcagcccaagtacggc
aaccgccgggcgtcgagcgcgctcaaggagttcgacgccgaccccgtcagcggcaaggcg
atcaaggtcaaggacggccggttcggcccgtacgtgaccgacggcgagacgaacgcgacc
atcccgcgcggcgagacggtcgacgaggtcgacttcgagcgggccgtgcagctgctcgct
gacaagcgcgcgaagggtccggcgaagaaggcgcccgccaaaaaggctccggccaagaag
gcgcccgcgaagaagcctgcggcgaagaccacggcggcgaagacgaccgcggcgaagacg
acagcagccaagaccaccaccacacgcaaggcggcggccacgaaaccggcagcggagtga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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