KEGG   Laceyella sacchari: C1X05_03310
Entry
C1X05_03310       CDS       T05304                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lfb  Laceyella sacchari
Pathway
lfb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lfb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C1X05_03310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lfb03019]
    C1X05_03310
   03009 Ribosome biogenesis [BR:lfb03009]
    C1X05_03310
Enzymes [BR:lfb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C1X05_03310
Messenger RNA biogenesis [BR:lfb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C1X05_03310
Ribosome biogenesis [BR:lfb03009]
 Prokaryotic type
  rRNA helicases
   C1X05_03310
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SMC_ScpB CMS1
Other DBs
NCBI-ProteinID: AUS07947
Position
614736..616208
AA seq 490 aa
MKTFHDFGLSPDVLKAVEGMGFDQPTPIQEKTIPLALDGQDVLGQAQTGTGKTAAFGIPL
VEKVSLDSDGIQGLVITPTRELAMQVAAALHRLGKVKRVRTLAVYGGQEIDKQIRSLKKR
PHIVVGTPGRLQDHLRRRTIRLNDLRMVAIDEADEMLQMGFIEEIEAILAQAPDIRQTLL
FSATMPPAIKTLAEKFMTQPVHVKVKAKEETIPSIEQYYIELHPKQKFDALCRLIETQAP
ELAMIFARTKKRVDEVAEGLNKRGYHAEGLHGDLSQARRTAVMQRFKQGMISILVATDVA
ARGLDISGVTHVYNFDIPQEAENYVHRIGRTGRAGKSGVATTFVTRREMDHLRMIEQVIR
RKMTRAEIPTIKDALREQQRIAVEQLAKVVDGQTDSDYATWANHLLDKHDPVTVVAAALK
LLTKEPNTTPVQISEDGGGFFPNKKGIRGKGGSRGGDWSKDKPRRHDRSAGKGKTFVANK
KKGKNHRVDV
NT seq 1473 nt   +upstreamnt  +downstreamnt
ttgaaaacatttcatgacttcgggcttagcccggatgtgttaaaagcggtggaggggatg
ggctttgaccagccgactccgatccaagaaaaaaccattcctctcgcattggatggccaa
gatgtattgggccaggcgcagaccgggacggggaagacagcggcattcggcatcccgctc
gtggaaaaggtttccctcgattcggacgggattcaaggtctggtcatcacgccgacccga
gagttggcgatgcaagtggctgcggcgttgcaccggttgggcaaggtcaagcgggtgcgg
acattggcggtgtacggaggccaggagattgacaagcaaatccgctcattgaagaaacgc
ccgcatattgtcgtgggcacgccaggacgattgcaggatcatttgcgccggcgaaccatc
cgcttgaacgatcttcggatggtggcgattgatgaagccgacgaaatgttgcagatgggc
tttatcgaggagattgaagcgattttggcacaagcgcctgacatcaggcaaacgctgttg
ttctcggcgacaatgccaccagcgatcaaaacgttggctgagaaatttatgacccaacca
gttcatgttaaagtaaaagccaaagaagagacgattcctagcattgaacaatattacatt
gaattgcacccgaaacagaagtttgacgccctttgccggttgatcgaaacgcaagcaccg
gaattggcgatgatcttcgcgcgcaccaaaaaacgggtggatgaggttgcggaagggcta
aacaagcggggataccatgctgaaggattgcacggtgacctttcgcaagcgcgtcggacg
gccgtcatgcaacggtttaaacaagggatgatctccattcttgtggctacggatgtggcg
gctcgcggattggatatcagcggtgtgacccatgtttacaactttgacatcccacaggaa
gcggaaaactatgtacaccggatcggccgcaccggcagagcagggaaatcgggtgtggcg
accacctttgtcacccgccgtgaaatggatcatctgcggatgatcgaacaggtgatccgc
cgcaaaatgacacgggcggaaattccgaccatcaaagacgcgttgcgggaacagcagcgc
atcgctgtcgagcagttagcaaaagtggtcgatgggcaaaccgacagcgattatgctaca
tgggccaaccacttgcttgataagcacgaccccgtgactgtcgttgccgcggcattgaaa
ctgctaaccaaagagcccaacaccacgcctgtgcaaatctcggaggatggtggcggcttc
ttccctaataagaaagggatcagaggcaaaggcggctcgcgtggcggtgactggagcaaa
gacaaaccccgccgccatgaccgctctgccggtaaaggtaagacgtttgtagccaacaaa
aaaaagggtaaaaaccatcgtgttgatgtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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