KEGG   Companilactobacillus farciminis: LF20184_05320
Entry
LF20184_05320     CDS       T06098                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
lfm  Companilactobacillus farciminis
Pathway
lfm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lfm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LF20184_05320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfm03021]
    LF20184_05320
   03400 DNA repair and recombination proteins [BR:lfm03400]
    LF20184_05320
Enzymes [BR:lfm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LF20184_05320
Transcription machinery [BR:lfm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LF20184_05320
DNA repair and recombination proteins [BR:lfm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LF20184_05320
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ATO46204
Position
1090769..1091023
AA seq 84 aa
MIIYPSIDKLLDRVDSRYSLAVLAAKRAHELENGDVELLSHYESPRTVGRAFEEIADDKI
EIDPNSILLEKEAEKVEEEKKEEN
NT seq 255 nt   +upstreamnt  +downstreamnt
atgattatttatccatcaattgataaacttttagatcgagttgactctcgttattcacta
gcagttctagctgccaaacgtgctcacgaattggaaaatggtgacgttgaactattgagc
cattatgaatcaccaagaactgttggtcgtgcatttgaagaaattgctgatgataaaatc
gaaatcgatcctaattcaattcttcttgaaaaagaagctgaaaaggttgaagaagagaaa
aaagaagaaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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