KEGG   Limosilactobacillus fermentum CECT 5716: LC40_0348
Entry
LC40_0348         CDS       T01958                                 
Name
(GenBank) DNA mismatch repair protein mutS
  KO
K03555  DNA mismatch repair protein MutS
Organism
lfr  Limosilactobacillus fermentum CECT 5716
Pathway
lfr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    LC40_0348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lfr03400]
    LC40_0348
DNA repair and recombination proteins [BR:lfr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     LC40_0348
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II AAA_14 AAA_16 Rad17 AAA_22 nSTAND3 AAA_29 ATPase_2
Other DBs
NCBI-ProteinID: ADJ40992
Position
608589..611210
AA seq 873 aa
MMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNPIPMCGVP
HRAVDNYVDILIDKGYKVAICEQMEDPKTTKGMVKREVTRLVTPGTTMDLAGDAARQNNY
LTALKQEQGGYNLAYADLSTGELKVTKVSNEAAAINELVNLQTREVVTEPEVSASLLDQL
TKRNILRSTQGQVVNQAEVAYLSQDLTDAGQRDVVALLVSYLLTTQKRSLAHLQRAVAYQ
LSSFMKIDHRSKVNLELTTNLRSGKRQGTLAWLLDETKTAMGSRLLKQWLDRPLLDQAKI
ERRYDRVQELLDHYFERQNLQEELIKVYDLERLAGRVAYGSVNGRDLIQLKTSLEQVPKI
KYILQTLDVPAFDDLEQALDPLEDVAGLIDRAIAPEPPISVTDGGVIRDGYNHQLDEYRG
AMQNGKQWIADLQEQERRATGINNLKIGYNHVFGYYIEVTKANIDKLPADRYERKQTLVN
AERFATPELKEKESLILGAQDKSTALEYELFVKVREAVKEQIDRLQKLAANLAALDVIQA
FAKVAEDYHFVRPSLNHDHQLQIEDGRHPVVEKFMGHQEYVPNDVLMGGDTSILLITGPN
MSGKSTYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMME
ANNALQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALE
GELDHLQNVHVGATEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQILTSL
EGQETAAVPSRGVEPPAPVIEPTPAKEQTPVKEQTTPLVEESSGQLELFATAPVEKKDGK
ADKLARQVKNLDLMSMTPMDVMNQVYKWQQNLK
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgatggaacagtaccaacgggtcaaggatcagtacccggatgcttttttgttttaccgc
ttgggcgacttttacgagatgtttaacgaggatgccgttaagggggcccagttactggaa
ctgaccctaacgtcacgtagcaagagcaaggataacccgatcccgatgtgtggggtaccc
caccgggcggtcgataactacgtcgatatcctaatcgataagggttacaaggtagcgatt
tgcgagcaaatggaggaccccaagacgaccaaggggatggttaagcgggaagttacccgg
ctagtaaccccggggacgacgatggacctagcgggggacgccgcccggcaaaataactac
ctaacggcgctcaaacaagagcaaggcggctacaacctggcgtacgccgacctgtcaact
ggggagttaaaggtcactaaggtgtcaaacgaggccgccgccattaacgaattagttaac
ctgcaaacgcgggaggtggtcaccgaaccggaagtttcagcgagcctgcttgaccaactg
accaagcgcaacattttacgttcaacgcaagggcaagtggtgaaccaagccgaggtggcc
tacttgagccaagacctcacggacgccgggcaacgagacgtggtcgccttattggtttcc
tacctgttaacgacgcaaaaacgctccctggcccacctacaacgggcggtggcctaccaa
ctctcttcctttatgaagattgaccaccgttccaaggtgaacctggagttgaccaccaac
ttgcgctcgggcaagcggcaggggacgctggcctggctcctcgatgagaccaagacggcg
atggggtcacgactgttaaagcagtggttagaccgaccgctgttggaccaggcaaagatt
gagcggcgctacgaccgggtccaggagctactcgatcactactttgagcgtcaaaacctg
caagaagaattgatcaaggtgtacgacctggagcgcttggccggtcgggtcgcctacggg
tcggtgaacgggcgtgatttgatccagttaaagacctccctggagcaggtacctaagatt
aaatacattttgcagacgttagacgtgccggcctttgatgacctggaacaggccttagac
ccccttgaggacgtagcgggtctgattgaccgggcaatcgccccggaaccaccgatctcg
gtcacggatggtggcgttattagggatggctataaccaccaactcgatgaataccggggc
gccatgcaaaacggcaagcagtggattgccgacctgcaagaacaagaacgccgggcgacc
gggatcaataacttaaagattggctacaaccacgtctttggctactacattgaggtcacc
aaggccaatatcgacaagttacccgctgaccgctacgaaagaaagcaaaccctggtgaat
gcggaacgctttgccaccccggaactaaaggaaaaggaaagcctgattttaggggcgcag
gacaagtcaaccgccctggaatacgagctcttcgtgaaggttcgagaagccgtcaaagaa
cagattgaccgcctgcaaaagctggcggcaaacctggcggccctagacgtcattcaggcc
ttcgctaaggtggccgaggactaccactttgtgcggccaagcctgaatcacgatcaccag
ctgcagattgaagacgggcgccacccggtcgtggaaaagttcatgggccaccaggagtac
gtgcctaacgacgtcttgatgggtggcgataccagcatcctgttgattaccgggccgaac
atgtctgggaagtcaacctacatgcgccaactagccctgacggcggtgatggcgcagatg
gggtgcttcgtgccagccaagcgggcccagctgccgatttttgaccaaatcttcacccgg
attggggccgccgatgayttggtatccggtgaatcgaccttcatggtggaaatgatggaa
gccaacaacgccctgcaaaacgctaccgccgacagcctgattttgtttgacgaaattggc
cgcggtaccgctacttacgacgggatggccttagcccaggcgattattgagtttgtgcac
aaccgggttggcgccaagaccctgttttcaacccactaccacgaattaaccgcccttgaa
ggcgaactggaccacctgcaaaacgttcacgtcggggcgaccgaagaaaacggtgagttg
gtcttcttgcataaggtaaccccggggccagctgataagtcctacgggatccacgtcgct
aagttagcggggatgccgacgccgctcttaacccgggccaaccaaatcctaaccagcctg
gaggggcaagaaacggcggcggttccttcgcggggtgtcgaaccaccagcaccggtgata
gaaccgacgccagcaaaggagcaaacgccggtcaaagagcaaacgaccccgttagtcgag
gagagtagcggtcaactcgaattgtttgccacggccccggtcgaaaaaaaggacggtaag
gccgataaacttgcccggcaagttaagaacttggacctgatgagcatgacgccgatggac
gtgatgaaccaggtttacaagtggcaacagaatctaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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