KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_183140
Entry
LOTGIDRAFT_183140 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03030  DNA replication
lgi03410  Base excision repair
lgi03420  Nucleotide excision repair
lgi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LOTGIDRAFT_183140
   03410 Base excision repair
    LOTGIDRAFT_183140
   03420 Nucleotide excision repair
    LOTGIDRAFT_183140
   03430 Mismatch repair
    LOTGIDRAFT_183140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lgi03032]
    LOTGIDRAFT_183140
   03400 DNA repair and recombination proteins [BR:lgi03400]
    LOTGIDRAFT_183140
Enzymes [BR:lgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LOTGIDRAFT_183140
    6.5.1.6  DNA ligase (ATP or NAD+)
     LOTGIDRAFT_183140
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LOTGIDRAFT_183140
DNA replication proteins [BR:lgi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LOTGIDRAFT_183140
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LOTGIDRAFT_183140
DNA repair and recombination proteins [BR:lgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LOTGIDRAFT_183140
   NER (nucleotide excision repair)
    Other NER factors
     LOTGIDRAFT_183140
   MMR (mismatch excision repair)
    Other MMR factors
     LOTGIDRAFT_183140
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR
Other DBs
NCBI-GeneID: 20244527
NCBI-ProteinID: XP_009060187
JGI: 183140
UniProt: V3ZDF8
Position
Unknown
AA seq 625 aa
MKSKYHPIKDACWRHGEKVPYLALSKTFEMIESTSARLKMIEILSNFLRSVIILSPNDLL
CCVYLCLNKLAPAYEGLELGIGDTILLRAIAQTTGRSMDQLKTSLHEKGDLGLVAESSRS
TQKTMFQPAKLTVSGVFSKLKDIANLTGNASQSKKGDKIKQLFVACRQSEARFIIRSLSG
KLRIGLAELSVLAALGNAVYLSPPCQEYPPEIIDSSKGLSAEVAKKKMEQCGLIIKTAYC
ELPSYDAIIPVLLKEGVEELPNKCKLTPGIPLKPMLAHPTKGIVEVLRRFENMEFTCEYK
YDGERAQIHIKDDGKICIYSRNSEDNTSKYPDIISRMPNILNDDVKSCVIDSEAVAWDAV
NKQIQPFQVLSHRKRKDADIKDIKVQVCVYAFDLLYLNGESLVQQPFRRRRELLRSSFKE
TEGEFVFATSIIASNTEAIEEFLDESIKGNCEGLMVKTLDVDATYEIAKRSHNWLKVKKD
YLEGVGDTLDVVVIGGYKGTGKRTGRYGGYLLAIYDPDNEEFQSICKIGTGLKDEDLEAH
TKFFKEHTMEKPKPYYRYDNSHQPDEWFDAVQVWEIKAADLSISPAHRAAAGLVDPEKGI
SLRFPRFLRIRDDKKPEEATSASQV
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgaagtcgaaatatcaccctattaaagatgcttgttggagacatggagaaaaagtgcca
tatcttgccctgtctaagacttttgaaatgatagaaagtacatcagcaaggttaaagatg
attgaaatattatctaattttctgcgttcagttattatattaagtcccaatgatttatta
tgctgtgtatatttgtgtttaaataaactagcaccagcgtatgaaggtttagaattagga
ataggggatactatattattacgagctattgctcaaaccacaggtcgaagtatggatcaa
cttaaaacatcattacatgaaaaaggtgatttaggtttagtggcagagagcagtagaagt
actcagaagacaatgtttcaaccagctaaattaactgttagtggtgtatttagtaaatta
aaagatatcgctaacttgacaggaaatgcttctcaatcaaaaaaaggagacaagattaaa
cagttatttgtggcgtgtagacagtctgaagccaggtttattattcgttcactatctggt
aaattaagaattggtttagctgaactatcagtattagctgctttaggtaatgctgtctat
ctttcaccaccatgtcaagaatatccaccagagataattgattctagtaaaggtttatca
gctgaggtagctaaaaagaaaatggaacaatgtggattgataattaaaacagcttattgt
gaacttccaagttatgatgccattataccagtattattaaaagagggtgtagaagaatta
cctaataaatgtaaactgacaccaggtataccattaaaacctatgttagctcatcctact
aaaggtatagtagaagttttaaggagatttgaaaatatggagtttacttgtgaatataag
tatgatggtgaaagagcacagatacatataaaagatgatggtaaaatttgtatatatagt
agaaattctgaagataataccagtaaatatcctgatattattagccgtatgcctaatata
ttgaatgatgatgttaaatcttgtgtcattgattcagaagctgtcgcttgggatgccgtt
aataaacaaattcaaccattccaagttcttagtcataggaagagaaaggatgctgatata
aaagatattaaagtacaagtatgtgtatatgcatttgatttattatatttaaatggtgaa
tctctagtacaacaaccatttagacggcgtcgagaattattacgctcttcatttaaagaa
acagaaggagaatttgtgtttgctacctctattattgcctccaatactgaagctattgaa
gagttcttagatgaatctatcaaaggtaattgtgaaggtttaatggtaaaaacattagat
gttgatgctacctatgaaatagctaaaagatctcataattggttaaaggtaaagaaggat
tatttagaaggtgtaggagatacattagatgtggttgttattggaggatataaaggaact
ggtaaaagaacaggtcgttatggaggttatctattggctatttatgaccctgataatgaa
gaatttcagagtatttgtaagattggaacaggattaaaagatgaagatttagaagctcat
acaaagttttttaaagaacatacaatggagaaacctaagccttattatagatatgataat
tctcatcaaccagatgaatggtttgatgctgtacaagtctgggaaattaaggctgcagat
ctatcaatatctccagcacatagagctgcagctggtctcgttgatcctgagaaaggcatc
tctttgaggtttcctagatttttaagaataagagatgacaaaaaaccagaagaagctacc
agtgcctcgcaagtatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (66)   

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