KEGG   Lactococcus garvieae Lg2: LCGL_0754
Entry
LCGL_0754         CDS       T01963                                 
Name
(GenBank) exoribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lgv  Lactococcus garvieae Lg2
Pathway
lgv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lgv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LCGL_0754
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgv03019]
    LCGL_0754
   03016 Transfer RNA biogenesis [BR:lgv03016]
    LCGL_0754
Enzymes [BR:lgv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LCGL_0754
Messenger RNA biogenesis [BR:lgv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LCGL_0754
Transfer RNA biogenesis [BR:lgv03016]
 Prokaryotic type
  tRNA degradation factors
   LCGL_0754
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1
Other DBs
NCBI-ProteinID: BAK60214
UniProt: F9VD13
Position
775814..778249
AA seq 811 aa
MKIKEVILDELKKHPKKAYAVEELAMELDLTKASDFKLFVKTLAALEGEGLLEFTNNGKV
TLAEVKAELVGIFRANANGFGFVTVDSDEPDVFIPKGRTAFALEGDEVKVELKSNANPLK
GTSAEGVVTEVLKRSVTQLVGTFVKFDEKERQEFERIGYVKSRNKKLPYHVFLTDKGLIP
EDKAVVRVDITAYPDKKNPKSMQGLAVEIVGQAGDKGIDVLEVLASLGIRSEFPEDVLAQ
AEAIPEEVDEKALMGRVDYRNEITFTIDGADAKDLDDAVHIKRLDNGNYELGVHIADVSH
YVTENSPLDREAFERGTSVYVADRVVPMLPERLSNGICSLNPRVNRLTQSCVMEITPEGK
VLQSQIGPSIIKTTERMTYDDVNLMLAGNEEALEKYAAIKESVEIMSELHEALAAMRRRR
GAIDFETMEARIIVDENGLPIEIRKRSRGTAERMIESFMLIANETVASSFETRHLPGIYR
IHEHPKEEKMTRFIDFAATFGLQVKGTSTEVSQKALQEFLKKVKGQPGEMVLSTMLLRSM
QQARYSEDNYGHFGLAAENYTHFTSPIRRYPDLIVHRLIRELAQPSPKTIEYWAEKIPEI
AQQSSNRERRAVDAEREVEKMKKAEFMEKHVGEQFEGVIASVTRFGMFIELENTIEGLVH
ISTIKGEYMNFHERMMALVGEKTGLVFRIGQPIKIQVTKADKVTGDIDFEYIKSDLDVVE
SNLKSKKEKGPRRRPKANRSENKDEHKASKREKNFSEKSKNKKYRGKSKDEERERKNDFD
KKPNKKKKKKPFYADAAKGKFGKNTKKKSKK
NT seq 2436 nt   +upstreamnt  +downstreamnt
atgaaaataaaagaagttatattggatgaacttaaaaagcatccaaagaaagcctatgct
gttgaagaactggcaatggaacttgacctaacaaaggcttcagattttaaactatttgtt
aaaactttagctgctcttgaaggtgaaggattactggaatttacaaataatggaaaagta
acactcgccgaagtaaaagcagagcttgtcggaatctttcgtgctaatgcgaatggtttt
ggttttgtaacagtcgattctgatgaacctgacgtttttattcctaaaggaagaacagct
tttgctcttgaaggagatgaagtaaaagtcgaactgaaaagtaatgctaatcctttaaaa
ggcacaagtgctgaaggtgtagttacagaggttttaaagcgttcggtcactcagcttgtc
ggaacttttgtcaaatttgatgaaaaagaacgtcaagagtttgaacgtatcggctatgta
aaatcacgtaataaaaagttgccttatcatgtctttttgacagataagggcttgatacca
gaggataaagcagtagtgcgtgttgatattaccgcttacccggataagaaaaatcccaaa
agtatgcaaggcttggctgttgaaattgtcggtcaagcgggtgataaaggaattgatgtt
cttgaagttttagcttcacttggtattcgttctgaatttccagaagacgttttggcgcaa
gcggaggctattccagaagaagttgatgagaaagccctcatggggcgcgtggactatcgt
aatgagattacattcaccatcgatggtgccgatgcaaaagacttagatgatgctgtgcat
atcaaacgcttggacaatggtaactatgagttgggcgttcacatcgccgacgtgtcacac
tatgtcacggaaaattcgcccttggaccgtgaagcttttgagcgtggtacatcggtatat
gtggccgatcgtgtcgtgccaatgctgcctgaacgactctcgaacggtatctgttcactc
aacccacgcgttaatcgcttgacgcagtcttgtgtgatggagattacgccagaagggaaa
gtccttcaatcacaaataggtccttccattatcaagacgactgaacgtatgacctatgat
gatgtcaacttgatgcttgctggtaacgaagaagcattagaaaaatatgctgcaattaaa
gaatccgtagagatcatgtctgaacttcacgaagctttagcagcgatgcgccgtcgtcgt
ggggcaattgattttgaaactatggaagcacgtattatcgtggatgaaaatggtttgcct
atcgaaattcgtaagcgcagtcgtggaacagccgaacgcatgattgaatccttcatgttg
attgctaatgaaacagttgcaagcagttttgaaacacgtcatttaccagggatttatcgt
attcacgaacatccaaaagaagaaaaaatgacccgctttatcgactttgctgcgaccttt
ggcttgcaagtcaaaggaacttcgacagaagttagtcaaaaagccttgcaagaatttttg
aaaaaagtgaaaggccaaccaggagaaatggtcctctcaacgatgcttctgcgttcgatg
caacaagcacgctattcggaagacaactacggtcactttggcttagcagcagaaaactat
acgcactttaccagtccgattcgtcgttatcctgacttgattgttcaccgattgatccgt
gagctggctcaaccaagtccaaagactatcgaatattgggcggaaaaaatacccgaaatt
gcccagcaatcaagtaaccgtgaacgtcgggccgtcgatgctgaacgtgaagttgaaaag
atgaaaaaagccgaatttatggaaaaacatgtcggcgaacagttcgaaggtgttattgct
agcgttactcgctttgggatgtttattgagcttgaaaataccatcgaaggtttggttcat
atttctactattaaaggggagtatatgaacttccatgaacgtatgatggcgcttgtagga
gaaaaaactgggcttgttttccgtattggtcaacccatcaaaatccaagtcactaaagcg
gataaagttaccggtgatattgactttgaatatatcaagagcgaccttgatgtggtcgaa
agtaacttaaaatccaaaaaagaaaaaggcccacgccgtagaccgaaagctaaccgttcc
gaaaataaagatgagcataaagcttcaaaacgcgaaaaaaacttctctgaaaagagtaaa
aataaaaaatacagaggaaaatccaaggacgaggagcgagagcgcaagaacgatttcgat
aaaaaaccaaataaaaagaaaaaaaagaaacctttctacgcggatgcagcaaaaggaaaa
tttggaaaaaatacgaagaaaaaatcgaaaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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