KEGG   Lysinibacillus varians: T479_20845
Entry
T479_20845        CDS       T03062                                 
Name
(GenBank) DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lgy  Lysinibacillus varians
Pathway
lgy03030  DNA replication
lgy03410  Base excision repair
lgy03420  Nucleotide excision repair
lgy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    T479_20845
   03410 Base excision repair
    T479_20845
   03420 Nucleotide excision repair
    T479_20845
   03430 Mismatch repair
    T479_20845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lgy03032]
    T479_20845
   03400 DNA repair and recombination proteins [BR:lgy03400]
    T479_20845
Enzymes [BR:lgy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     T479_20845
DNA replication proteins [BR:lgy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     T479_20845
DNA repair and recombination proteins [BR:lgy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     T479_20845
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     T479_20845
   MMR (mismatch excision repair)
    DNA ligase
     T479_20845
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      T479_20845
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD 5_3_exonuc BRCT_2
Other DBs
NCBI-ProteinID: AHN23401
UniProt: A0A806LMK1
Position
complement(4097315..4099312)
AA seq 665 aa
MNEIEQRIAELNKLLHEYGHAYYVLDNPLVADSVYDQLLHELIALEEANPSLIYPDSPTQ
RVGGAIVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKIRQAIGDHFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEDITANLKTIRAVPLRLKEPITIEVRGEAYMPKKSFEKLN
AQRAENGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEAYGIDGHGEMLDY
LEGIGFPSNKERQRCASIEEVLSFIEYWTENRPNLAYEIDGIVIKVDRFAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILAPVLVAGTTVQRASLHNEDLIR
EKDIRIGDTVIIRKAGDIIPQVVGVLLEQRPEDSTPYEMPPNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGEKVVEQLLRADLIHDVSDLYQLTVEQLVELE
RMGEKSATNLVKAIQASKDNSMERLLIGLGIRHVGEKAAKIVSEEFETMEAVMAASEEQL
VAIHEIGDKMASSLVEYFANEDARAVIKRLAEAGVNMTYKGKKVEVIVGDNPFAGKTIVL
TGKLEQLTRNDAKAKIEELGGIVTGSVSKKTDLVIAGSDAGSKLTKAQQLGIEIWNEDDL
IEQLT
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgaatgaaattgaacagcgcatagcggagttaaataaattattgcatgaatatgggcat
gcgtattacgtgctagataaccctctagttgcagatagtgtatatgaccagctattacat
gaactcattgcattagaagaggcaaatccttcacttatttatcctgattcaccaacacaa
cgtgtaggcggtgcaatcgtagaaggatttaagaaagtgacgcatgattatccgatgcta
agtctgtcaaacgcatttaatgaagcggacttacaagagtttgaccgtaaaattcgtcaa
gcaatcggcgatcacttttcttatgtttgcgaattaaaaatagatggtcttgctatttca
ttaaaatatgagaatggtgtttttgtacaaggagctacacgcggtgatggcgttgtagga
gaagatataacagcgaatttaaaaacgattcgtgctgtgccactgcgcttaaaagaacca
attacgattgaagtacgtggcgaagcctatatgcctaaaaaatcatttgaaaaattgaat
gcccagcgagcagaaaatggcgaagaattatttgcaaatcctcgcaatgccgctgctggc
tcattgcgtcaattagatcctaaaattgccgcaagtcgtcaattatcaacctttatctat
gcaattgggggagatggtgaggcgtacggaattgatggacatggcgaaatgctagattat
ttagaaggaatcggcttcccttcaaataaggagcgtcaacgttgcgcgtccattgaggaa
gtattgtcctttattgaatattggacagaaaacagaccgaatttagcctatgaaattgat
ggtattgttatcaaagtcgaccgttttgcacagcaggatgaactcggctatacggcaaaa
agtccaagatgggcaattgcctacaaattccccgctgaagaagttgtcacaacattactt
gatattgatttaacagtagggcgcactggcgttgtcacaccaactgcgattttagcaccg
gtactggtagctggaactacagtgcaacgcgcctctctacacaatgaagatttaattcgc
gagaaggatattcgcattggagataccgtcattatccgaaaagctggggatattattcct
caagtagtcggggtattattagagcaacgtccagaagattcaactccttacgaaatgccg
ccaaattgcccggtatgtgatagtgagctgattcgaattgagggggaggttgccttacgc
tgtgtgaatccagcttgttttgcccaaattgcagagagcatcaagtactttgtctcccgt
aacgccatgaatattgatgggcttggagagaaggttgtcgagcaactgttgcgcgctgat
ttaattcatgatgtatccgatctatatcagttaacagtggagcaattagtagagttggaa
cgaatgggtgagaaatcagctaccaacctagtgaaagctattcaagcatctaaggacaat
tcgatggaacgtctattgattgggttaggaatacgacatgttggagagaaggcagcgaaa
atcgtgtcagaggaatttgagacgatggaggcggtgatggctgcatctgaagaacaactt
gttgcgattcatgaaattggcgataaaatggcctcgtcactcgttgagtattttgctaat
gaagatgcccgtgctgttattaaacgacttgctgaagcgggtgtcaatatgacatataaa
ggcaaaaaggtggaagtaatcgtaggagacaatccatttgcagggaaaacaattgtatta
actggtaaacttgagcaattgacacggaacgatgcaaaggcgaaaatagaagagttaggt
ggaattgtcacaggcagtgttagtaagaaaacagaccttgttattgctggttcggatgca
ggttccaaactaacgaaagcacaacaactaggcattgaaatttggaacgaagatgaccta
attgagcaactgacttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system