KEGG   Laribacter hongkongensis: LHK_01201
Entry
LHK_01201         CDS       T00884                                 
Name
(GenBank) Exonuclease V alpha subunit RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lhk  Laribacter hongkongensis
Pathway
lhk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LHK_01201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lhk03400]
    LHK_01201
Enzymes [BR:lhk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LHK_01201
DNA repair and recombination proteins [BR:lhk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LHK_01201
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 AAA_11 RecD_N SH3_13 AAA_22 Helicase_RecD UvrD-helicase nSTAND3 T2SSE SLFN-g3_helicase NACHT FeS_assembly_P UvrD_C AAA_28 AAA_16 DUF3322
Other DBs
NCBI-ProteinID: ACO74192
UniProt: C1D6T5
Position
complement(1157608..1159572)
AA seq 654 aa
MLTPDSLFAVLDTLVGTRRLRPLDRALARFLAGHVPDTPPAVLLATVLASHQLGRGHPAL
DLAAVHADPAATLGWADDGDTPDLTALPVFAGPLSGWLAQLESAACIDRPPADSGAPLVL
AGHNLYLRRYWQCEETVVEAIRARLPQRLAVPDDLSVRLDRLLADMRDADEAARRQTHWQ
SVAVALAARLGFCIISGGPGTGKTTTVVRLLGLLQGLTLDAGRTPLAIRLAAPTGKAAAR
LQDSIRQAVARLDPAVREHVPAEVSTLHRLLGPLPDSRHFRHHAGQPLPLDVLVIDEASM
IDLEMMAAVLSALPAHARLILLGDKDQLASVEAGAVLGSLCAGSRVDVQDPAQWAGSHEM
AAWLGAASGYAVKADGLPAGALTDHVVVLKKSHRFGDDSGIGELARAVNDGDASRAATVW
PRHADSIARLEPASRCIEQLALQGRSSGSPAGWQAASYRAYLEIMAAGDQGDPDGWARQV
LEAFNRFRVLCALRQGEEGVSGVNAAIEASLRTAGLLPAGRSEWYAGRPVMVLKNDYGLG
LMNGDTGIALPMPDATLRVCFALPDGRVRQVLPSRLTDVESAFAMTVHKSQGSEFSHTVL
LLPQHDSPILTRELVYTGITRARDRLTLVGSADIFRRAVSRRTVRHSGLAQRLG
NT seq 1965 nt   +upstreamnt  +downstreamnt
atgctgacgcctgattccctgtttgccgtactggacaccctggtcgggactcgccgcctg
cgtccgctggaccgggcgctggcccgctttctggccggacacgtaccggacaccccgccg
gccgtcctgctggccaccgtactggccagccaccagctggggcgcggccatccggcgctg
gacctggccgccgtccatgccgacccggccgccacgctgggctgggccgacgatggcgat
acgccggacctgacggccttgccggtatttgccgggccgctgtccggctggctggcgcag
ctcgaaagtgccgcctgtatcgaccggccgccggccgacagcggtgcgccgctggtgctg
gccggccacaacctgtacctgcgccgctactggcagtgcgaggaaaccgtggtggaggcc
atccgcgcccgcctgccgcagcgcctggcggtgccggacgacctgtccgtccggctggac
cggctgctggccgacatgcgtgatgccgacgaagcggcccgccgccagacccactggcag
tcggtggcggtggcactggcggcccggctggggttctgcatcatttccggcggtccgggc
accggcaagaccaccacggtggtccgcctgctgggcctgttgcagggactgacgctggat
gccggcaggacgccgctcgcaatccggctggctgcccccaccggcaaggcggcggcccgc
ttgcaggattcgatccgccaggcggtggcccggcttgacccggccgtccgcgagcatgtc
cccgccgaggtgtcgaccctgcaccggctgctgggcccgctgccggacagccggcatttc
cgtcaccatgccggccagccgctgccgctggacgtgctggtgatcgacgaagcctcgatg
atcgaccttgaaatgatggccgcggtgctctcggccctgccggcccatgcccggctgatc
ctgctgggcgacaaggaccagctggcttcggtcgaggccggtgccgtgctgggcagcctg
tgcgccggcagccgggtggatgtgcaggatccggcgcaatgggccggcagccacgaaatg
gcagcctggctgggcgcggccagcggctatgcggtcaaggccgacggcctgccagccgga
gcgctgaccgaccatgtggtggtattgaaaaagagccaccgcttcggggacgacagcggc
atcggcgagctggcccgcgcggtgaacgacggcgatgcctcgcgggcggccaccgtgtgg
ccgcgtcacgccgacagcatcgcccggctggagccggcttcccgctgcatcgaacagctg
gcgctacagggccgcagcagtggcagcccggcaggctggcaggccgccagttaccgcgcc
tatctggaaatcatggccgccggcgaccagggcgatcccgacggctgggcgcgccaggtg
ctggaggcgttcaaccgcttccgggtgctgtgtgccctgcgccagggcgaggaaggcgtc
agcggcgtcaatgccgccatcgaggccagcctgcgcacagccgggctgctgccggccggt
cgcagcgaatggtatgccggccgcccggtgatggtgctgaaaaacgattacggactcggg
ctgatgaacggcgacaccggcattgccctgccgatgcccgacgccacgctgcgcgtgtgc
tttgccctgcccgacggccgggtacgccaggtattgcccagccggctgaccgacgtggaa
agcgcgtttgccatgacggtccacaagtcacagggatcggaattcagccacaccgtcttg
ctgctgccgcagcacgacagcccgatcctgacccgcgagctggtgtataccggcatcacc
cgcgcccgtgaccggctgacactggtgggcagtgccgacattttccggcgtgccgtcagc
cgccgcaccgtccgccacagcggactggcccagcggctgggctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (40)   

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