KEGG   Linepithema humile (Argentine ant): 105670002
Entry
105670002         CDS       T04898                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
  KO
K08131  collagen type IX alpha
Organism
lhu  Linepithema humile (Argentine ant)
Pathway
lhu04512  ECM-receptor interaction
lhu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lhu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    105670002
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    105670002
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:lhu00535]
    105670002
Proteoglycans [BR:lhu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   105670002
SSDB
Motif
Pfam: Collagen Laminin_G_2
Other DBs
NCBI-GeneID: 105670002
NCBI-ProteinID: XP_012218693
Position
Unknown
AA seq 887 aa
MYMQTWLFMIVYLSYTQYVMGEDTIKRGLCNGYKSGEDDQQTFDFISKLKFDLLEARYSG
MMKVRGSNRMQTAYRLERDTDVILPTKNITANGFPEEFTLVYTLRARKSPRNPWHVIKIV
DAKGDAQFLITMNPRRQTLDLSLIDYEGKLQTLSFMNDRLFDKSWHKVNFGVYKDKLVLN
VDCIHIGTKALKPRRSIKGDGDISIAKMNNSEVTVPIDMQWMVLNCDPTRAERETCEEIP
QNLVAPLSQIKPACEICPQGPRGFNGTNGSPGPPGLTGAPGLTGSPGLPGFPGQRGLPGE
QGRSGATGNIGARGFPGLPGPIGSTGPVGSPGLPGQKGDRGERGDMGFPGLKGDQGPRGF
PGPPGNVSNFDGNLSHLTGPSGPPGYTGEKGAKGDYGIQGKPGEKGERGERGYPGLDGHN
GAPGPPGLPGFPGPPGPTRNPTYADIPRIPGPPGPRGITGPPGLPGPPGLPGEMGPKGDA
GDRGRDGISGLTDNSVIPGPPGPEGLVGPPGDDGLPGEKGENGPIGPPGLPGTLGKDGLP
GLPGPQGLLGSRGEPGSPGPRGLDGFMGKPGLDGKPGQKGNKGQSGEQGPVGPRGLPGSS
GPAGSPGTPGVPGLEGRPGPFGPPGPSGPPGPPGPPGPSSLSSTDSSFVNIGNPGLEGPR
GPPGPQGIPGERGAPGERGSEGQLGPPGIPGRDGTPGLQGSPGNRGQTGLPGLEGPPGRS
ISEVEIRDICASVLRERITEITTLMQGPPGPPGRGRPGRSGSPGPQGRPGDQGPPGFPGE
RGFVGLPGPQGPSGPQGSPGERGEKGDRGLEGVGIEGPTGPPGLPGPPGNDGIGLPGTQG
DRGEPGRPGIPGIRGVAGPQGPPGFCEFCNYPSSNYLQYNRGNTKGP
NT seq 2664 nt   +upstreamnt  +downstreamnt
atgtatatgcaaacatggctattcatgatagtgtatttgtcatatacccaatatgttatg
ggagaagatactatcaaacgtgggctgtgcaatggctacaaatccggcgaagacgatcaa
cagaccttcgatttcatcagcaagttaaaattcgatctgttggaggcccgctatagtggc
atgatgaaagtgcgaggcagcaaccgcatgcagacggcatatcggctggagagagacact
gatgtcatcctaccgacaaaaaatattacagctaatggatttccagaagaattcacgtta
gtgtacacattgagagctagaaaatcgcctaggaacccttggcatgtcattaagatcgtg
gatgcgaaaggtgacgctcaatttctcattacgatgaatcccaggagacaaacgctggac
ctttcattgattgattacgagggaaaattgcagacgctttctttcatgaacgatcgctta
ttcgacaagagttggcacaaagtaaattttggagtgtacaaggataagctagtacttaac
gttgattgtatacacattggcacgaaagcgctaaaaccgcgcagatcgattaaaggtgat
ggagacatatcaatagctaaaatgaacaacagtgaagtcactgtaccgatcgatatgcaa
tggatggtcctaaactgcgatcctacgagagcggagagggaaacgtgcgaggaaataccg
caaaacctagtcgctccgttgtcgcaaataaaacccgcctgcgaaatctgtccgcaggga
ccacgtggatttaatggcacaaacggatcacccggtccgcctggactaactggagcgccg
ggattgactggatcaccaggtttacctggatttcccggacaacgtggattacctggggaa
caaggaagatcaggggcaacaggtaacatcggcgccagaggttttccaggattaccgggt
cccataggatcaactggacccgtaggatcaccgggattaccgggacaaaagggcgatcgc
ggtgaaagaggtgatatgggatttcccggtctgaaaggagatcaaggtcctcgtggattt
ccgggtccgccggggaacgtaagcaattttgatggtaatttatcgcacttaacgggccct
tctggaccgcctggatataccggcgaaaaaggggcgaaaggagattacggtattcaaggc
aagccgggtgaaaaaggtgaacggggagaaagaggatatccgggattggatggtcataac
ggcgcaccaggacctcctggtcttccaggatttcccggtccgcctggacccacaaggaac
cctacatatgcggatatccctcgcattcctggaccaccaggtcctcgtggcataacaggt
cctccaggattgccaggacctccgggtttgccaggtgaaatgggaccgaagggtgatgcc
ggagaccgaggtcgagatggtatatcgggactaacagataatagtgtaataccaggacca
ccgggtcctgaaggacttgttggtccccctggcgatgatggtcttccaggcgagaaagga
gaaaatggaccaataggtcctccaggactacctggaactctaggaaaagatggacttcca
ggattaccgggaccacagggacttctagggtcacgtggagaaccaggttctccaggacct
cgaggtttagatggatttatgggaaaaccggggctcgatggaaaaccgggccagaaggga
aataaaggccagagcggcgaacaaggtcctgtcggacctcgcgggctaccgggaagttcg
ggaccagcaggctcgccaggtacgccaggcgtaccaggattggaaggaagaccaggtcca
ttcggacctccaggaccgtcgggtccgccaggacctccgggtcctcccggtccttccagt
ctttcatccaccgatagtagttttgttaatatcggcaatcctggtctcgaagggcccaga
ggtccaccgggtcctcaaggaataccgggtgagagaggagctcctggagaacgaggatcg
gaaggtcaattaggaccgcctggtattcctggtagagatggaacacctggattacaagga
tcgcctggaaatagaggtcagaccggattaccgggactcgaagggccgccgggtcgcagt
attagcgaggtggagattcgtgatatttgcgccagtgtactgagagaacggataaccgaa
atcacaacattgatgcaaggcccacccggtccaccaggccgaggccgtccaggtcgttct
ggatcacccggccctcagggtcgtccaggcgatcaaggaccaccgggatttccaggagaa
cgtggattcgtcggtttaccgggtccgcaaggtccttctggaccgcaaggatcacctggc
gaacgtggagaaaaaggagacaggggtctcgaaggcgtcggtatagaaggtccgactggc
ccaccaggtttaccaggacctcctggtaatgatggtattggtctacctggaacacaggga
gacaggggagagccaggcagaccaggaattcctggtataagaggagtggcaggaccgcag
ggaccacctggattttgtgaattctgcaattatcctagcagcaattacttgcagtataat
cgtggtaacaccaaaggaccctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system