KEGG   Linepithema humile (Argentine ant): 105672733
Entry
105672733         CDS       T04898                                 
Name
(RefSeq) ATP-dependent RNA helicase DDX42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]
Organism
lhu  Linepithema humile (Argentine ant)
Pathway
lhu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lhu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105672733
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lhu03041]
    105672733
Spliceosome [BR:lhu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    105672733
 Complex B
    105672733
 Complex C
   U2 SnRNP specific factors
    105672733
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C MscL
Other DBs
NCBI-GeneID: 105672733
NCBI-ProteinID: XP_012223288
Position
Unknown
AA seq 768 aa
MSYHRGGGNKPKGFGFAGFQVSGTKRSGTNIPPPPPNSALSKQGYHTMNAITENALSACW
GMPKKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSSKKDESDSEEDPLDAFMA
GIDAEVKRNSSAAQCDDQRKEDKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQE
IEYDEDGNPIAPPKKKEIDPLPPIDHSEIEYESFEKNFYNVHEEIASLGKQQIDDLRKTL
GIKVSGPSPPNPITSFGHFGFDDPLIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKT
GSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCC
CYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLARVTFLVLDEADRMFDMGFEP
QVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPVRIVQGDVGEANTDVTQHVIMFH
NNPSGKWTWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERN
KVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTA
YTLVTEKDKEFAGHLVRNLEGANQEVPKSLIDLAMQSAWFRKSRFKGGKGKSMNVGGAGL
GFRGRPDTSNSSGSSSQASKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRASSDH
TWEQTITPPSVIMPPPPTVPPPKPVGQDSEASNSSAPERKRVRKSRWE
NT seq 2307 nt   +upstreamnt  +downstreamnt
atgagctaccaccgaggaggtggtaataagccaaaaggttttggctttgctggcttccaa
gtgtctggaacaaaaaggagtggcactaatatacctccaccaccaccgaattctgccttg
agtaaacaaggctatcatacaatgaatgctattacagaaaatgctctatctgcttgttgg
ggcatgccgaagaagcgcagtaaaaccgaggaagagtattttgaggatgatgatgaacct
ccaacttcctcattggaatatatacctgcacccggttctcccacatatgacttaatgaaa
aaatcgtcaaagaaggatgagagtgacagtgaagaagatcccttggatgctttcatggcg
ggtattgatgcagaagttaaacgaaacagttctgcagctcaatgcgacgaccaacgtaaa
gaagacaaatctaagggatttcgggcagatatcgatggagaggatgatgaggagagttac
tacagatatatggaagaaaatccaactgccggcttgcagcaagaagaatccgatcaagaa
attgaatatgacgaagatggcaaccccatcgctccaccaaaaaagaaggaaatcgatcca
ttaccgccgattgatcacagcgaaatagaatatgagtcatttgagaaaaatttttacaat
gtgcatgaggagatcgcaagtttgggtaaacaacagatcgacgatttgagaaagactctg
ggtataaaggtatccggaccgtctccgccgaatccgattacaagtttcggccatttcggt
ttcgacgacccgctcataaaggctatccgtaagaacgagtacacacagcccacgcctatt
caggcgcaggcggttcccgccgctttaagcgggcgagatataataggcatagcgaaaacc
ggtagcggcaaaacggcggcgtttatctggccgatgttggtgcacattatggatcagcgt
gaactgaaagctggagacggtcctatcggtcttattctggcgccgaccagagaattgtct
caacagatttatcaagaagcgaaaaaattcgggaaagtttacaatattcaagtgtgctgt
tgctacggaggtggcagcaaatgggaacagagcaaagcgttggaaagcggcgcggaaatc
gtagtcgccactcctggcagaatgatcgatctagttaagatgaaagcaacgaatttggcc
agggttacgtttttggttctggacgaagccgacagaatgttcgacatgggatttgaaccg
caagtacgatctatatgtaatcacgtgaggcctgataggcaaacattgctatttagcgcg
acattcaaaaagaaagtagagaaacttgctagagacgttctgacagatccggttaggata
gtgcaaggtgacgtcggcgaggctaacaccgacgtgacacagcacgttatcatgttccat
aacaatcctagtggcaaatggacctggctgctgcagaacttggtcgaatttctaagcgct
ggcagtcttttgatctttgtcactaagaagctgaacgcggaagagctcgccaacaatctc
aaactcaaagagtttgacgtgttgcttctgcacggtgatatggatcagattgagaggaac
aaagtgattacggctttcaagaagaaggatgtcagtaccttagtcgccactgacgtagcc
gcgcgaggtttggacattccgcatatcaagactgtggtgaattacgatgtagcgcgagat
atcgatacacatacacacagaataggaagaacaggccgagccggtgagaagggcacagcg
tacactcttgtaacggaaaaagataaggagtttgctggacatttagtgagaaacttggaa
ggagcgaatcaagaagtgccaaagagcttgatagatttggccatgcagagcgcttggttc
aggaaatcgaggtttaagggtggaaaaggaaagagcatgaatgtcggtggagctggactt
ggtttcagaggcagacccgatacttcaaattcgagcggatcatcgtcgcaagcatccaag
gatattagcgaagttgttaaaaaactagaaagacacgggccaggtagcgatcgactttcc
gctatgaaagccgctttcagaagtcaatataattcccagttccgagcatcatcggatcac
acctgggaacaaacaatcactccaccttccgtgataatgccgcctccaccgactgttccg
ccaccaaagcccgtgggccaggacagtgaagcctccaattcttcagcaccggagcgtaaa
agagtgcgaaaaagtcgatgggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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