KEGG T04898: 105673743

Linepithema humile (Argentine ant): 105673743

Entry

105673743         CDS       T04898

Name

(RefSeq) DNA mismatch repair protein Msh2

K08735

DNA mismatch repair protein MSH2

Organism

lhu Linepithema humile (Argentine ant)

Pathway

lhu03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:lhu00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    105673743
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lhu03400]
    105673743
DNA repair and recombination proteins [BR:lhu03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     105673743

SSDB

Motif

Pfam:

MutS_V MutS_III MutS_IV MutS_II MutS_I AAA_27

Other DBs

NCBI-GeneID:

105673743

NCBI-ProteinID:

XP_012225009

Position

Unknown

AA seq 923 aa
MAVQPNQQFSMDPPTQQSFVRFFKSLPEKLNTTIRLFNRSDYYTVHGSDALFAAQQIFKT
TSVCKMIGAEPNKTEGVILNKGHFETFVRDLLLVKQYRVEVYVNQGSAKNQNWILEYKGS
PGNLSHFEDILFGNNDIAVGVSVIAVRLGTEGKSRVVGLSCIDVVSTLISVTEFQDTESF
SNLESLVVTLAPKECLLIQGEGSYEFQTLKQLIERSNVMVTLRKKSEFSSDSIVDDLNTL
IKFKKGQKQNAQSIPEINLNLAMSATSALIKYLDLTSDEGHMNQFTINQVEQSRYIRLDS
AAIKALNIEPHVDAGSNLHGNPVASILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIKERH
DVVELLVKNNELRSILSDDYLKRIPDLQQLAKKLARKKSALQDCYKIYLCISYLPKLLEQ
LLPEANVTALKAMIIDPLRELVEDMDKFQQLVEQTIDLDAAEKGDFMVNPGFADDFKTLK
DAMDEMEERIQQLLGKAADDLCLEAGKTIKLECNQQLGYYLRITLKEEKILRNKKHYTIL
DSNKTGVRFRNSKLSELNDDFISARNKYLERQKDVIAEIVGIAAGYSETVRAIGGVLACL
DVLTAFASAAISANKVYVRPEMVPSEKGELNLIQVRHPCLEMQQGIDYIANDVTFKRDKC
HFCIITGPNMGGKSTYIRSVGVTALMAHIGSFVPCDKATISLLDCILARVGADDSQLKGL
STFMMEMIETAAILKTATCNSLVIIDELGRGTSTYEGCGIAWSIAEHLARDIKSYCLFAT
HFHEITKLAEEISTVKNQHVTALVEDNKLTLLYQVKPGICDQSFGLHVAKMANFPQNVIE
FAKRKQAELEDYQSVVFEGSDNPQKKRKIIQEAETLISQFLMKCKTLDQSLSDADLENQI
SSLREDVLSHKNPYIEALLTASS

NT seq 2772 nt +upstreamnt +downstreamnt
atggcagtacaacctaaccaacagtttagtatggatcctcctacacaacaaagttttgtc
agattttttaaaagtctgccagagaaacttaacacaacgatacgactcttcaatagatca
gactattatacagtgcatggaagtgacgctctgtttgctgcacagcaaatatttaaaaca
acatctgtttgcaaaatgatcggagctgagccgaataaaacggaaggtgttattctcaat
aaaggccatttcgagacatttgtacgcgatttgttgttagtaaagcagtacagagttgaa
gtttatgttaatcaaggctccgcgaaaaatcaaaactggatcttagagtacaaaggttca
cccggcaatctatctcatttcgaagatatcttattcggcaataatgacatagccgtgggc
gtatccgtaatagctgtgagattgggtacagaaggaaagtccagagtcgtcggtttaagt
tgcatcgacgtcgtttcaactttaatttcagtcactgaatttcaagacaccgagtcattt
tcgaatctagagtcactcgttgtaactctcgctccaaaggaatgcttattgattcaagga
gaaggcagttatgaatttcaaactcttaaacagctgatagaaagaagcaacgtgatggta
actttaagaaagaaaagtgaattttccagcgattcgatcgtagatgatttaaacacgttg
ataaaatttaagaaagggcagaaacaaaatgcgcagtcaataccagaaattaacttaaat
ctggctatgtctgctacatctgctctcattaaatatttagatttaacatcggatgaaggt
catatgaatcaatttaccataaatcaagtggaacaatcgcgatacataagactggattct
gccgcgataaaagctctcaacattgagccacacgtcgatgcaggttctaatttacatgga
aatcctgttgctagcatcttgacattgctagacaaatgtagaaccgcacaaggacacaga
ctgattgcacagtgggttcgacagcctcttagagatttatctttgataaaagagcggcat
gatgttgttgaactattggtaaaaaataacgaattaagatctattctcagtgacgattat
ttaaaacgtataccggatttgcaacagctggcgaagaaattggctagaaagaaatcagca
ttgcaagactgttacaaaatctatttgtgtatatcgtacttgccaaaattgctggaacaa
cttttaccagaagcaaatgtgacagcattgaaagcaatgatcatagatccattgagagaa
cttgtcgaagatatggacaagtttcaacagctggtggagcaaacaatcgatttggatgct
gccgaaaaaggagatttcatggttaatccaggatttgcagacgattttaaaacgctaaaa
gatgcgatggatgaaatggaagaaaggatacaacaattactcggtaaagcggcggatgat
ctttgcttggaagcaggaaaaacaataaagttggaatgtaatcaacagttgggctactat
cttcgcattacattgaaagaagagaagatacttcggaataaaaaacattacaccattttg
gattctaataaaactggtgtaagattccgaaacagcaaattaagcgaattgaatgacgat
tttatatctgctagaaataaatacttggaaagacaaaaggatgttattgcagaaattgtg
ggaattgcagctggttatagcgaaacggtgcgtgctatcggtggtgtgcttgcgtgtctc
gatgttctcactgcgttcgcttctgcagcaataagtgctaataaagtgtacgtgcgtccc
gaaatggtcccgagtgaaaaaggtgaattgaatctcattcaagttagacacccgtgtttg
gaaatgcaacaaggaatagactatattgccaatgatgtcacttttaagcgagataaatgt
catttttgcattattactggtccaaacatgggaggtaaaagtacttacattagatctgtt
ggtgtaactgcactgatggctcatatcggcagttttgttccttgtgataaagcaactata
tcattactggattgtatattggctcgagtgggagcggatgattctcagttgaaaggattg
tcgacttttatgatggaaatgatagaaactgcagctattttgaaaacagcaacgtgtaat
tctcttgtaattattgatgaattgggcagaggaacatcaacttacgagggttgtggcatt
gcatggtcaatagcagaacatttggcgagagatattaaatcgtactgtctgtttgctaca
catttccatgagatcaccaaactagccgaagaaatatctactgtaaaaaatcagcatgtt
accgctcttgtcgaagataataaattgacgttgctttatcaagtaaagccaggaatttgc
gatcaaagtttcggccttcatgttgccaaaatggctaatttcccgcaaaatgtaatagag
ttcgctaaaagaaaacaagcagaacttgaggactatcaaagtgtagtttttgaaggatct
gacaatccccagaagaagcgaaagattattcaggaagctgaaacacttatctcacaattc
ctcatgaaatgtaaaactttggatcaatctttatctgatgccgatctggaaaaccaaata
tcgtcattgagggaagatgttctctctcataaaaatccttatatcgaagcattgctcacc
gcttcttcttaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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