KEGG T02744: lhe

Lactobacillus helveticus CNRZ32: lhe_1604

Entry

lhe_1604          CDS       T02744

Name

(GenBank) exoribonuclease RNase R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

lhv Lactobacillus helveticus CNRZ32

Pathway

lhv03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:lhv00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    lhe_1604
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lhv03019]
    lhe_1604
   03016 Transfer RNA biogenesis [BR:lhv03016]
    lhe_1604
Enzymes [BR:lhv01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     lhe_1604
Messenger RNA biogenesis [BR:lhv03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     lhe_1604
Transfer RNA biogenesis [BR:lhv03016]
Prokaryotic type
  tRNA degradation factors
   lhe_1604

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 GRP BRINP

Other DBs

NCBI-ProteinID:

AGQ24037

Position

complement(1877812..1880151)

AA seq 779 aa
MAQNEKILAGVLEIFRHNPQKQFRVDQIEREARHERLGNFTELIKALSFLEHANKIITDG
KGEYQLAQANTIVEGIFKANDKGFGFVKLDDENVDDVFIAADYTKYAVDGDRVKVKIVAD
GNPWNGKGPEGRIEEILERGLESLVGEFHPLTDEQRKISPFIGYALSNNKKLHKYRVYLT
ENGLIPQMGDMVRVSIKDYPEEDYPESMTGAVTKIIGNKNDPGVDIMSIVSAHDVRTDWP
EDAMAQANAIPDHVTEEEKKGRVDITDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH
IADVSHYVKENTPLNEEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDME
ITPEGKRVGYKIYPSVMRSHGRMTYNKVNKTLRGEMDGLEDKYVKLRPMLEEMADLHAIL
YKQRHKRGAIDFEAPEAKIIVDDQGKPTEIVLHERGTAEKMIESFMLMANETVAEDFFRK
HVPFLYRVHETPDAERIKSFFEFCSAFGLNIHADPENIKPLDLQKVVSKTTGTPEEAVVQ
MMMLRSLKQAHYSEDALGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHAYQENGTTEDMQK
HFASYLPDVAEQTSAQERRSIDTERGVNDLKMTEYMADQVGQHFDAVVSSVTSFGMFIQL
PNTVEGLVHISNLTDDFYSFNEKSLTLTGRGTHKQYKIGMPIKVTLINANVEQHQLDFEV
YDPNAPKKKHNDRGMNNRRHGNLGFHNNRGHRGGGNYNSRGNRRNHGQGNRRNQRNFKH

NT seq 2340 nt +upstreamnt +downstreamnt
atggcacaaaacgaaaaaattttggccggtgttttagaaatttttcgccataatccacaa
aaacaatttcgcgtagatcaaattgaacgagaagcgcgtcatgaaagattgggtaatttt
acagaattaattaaggctctttctttcttagaacatgcaaataaaattattactgatggc
aagggagaatatcaattggctcaagccaacacaattgttgaaggtatctttaaggctaat
gacaagggctttggttttgtaaagttagacgatgaaaatgttgatgatgtttttatcgca
gctgattataccaagtatgccgttgatggtgacagagtaaaggtaaagatcgtagctgac
ggtaatccttggaatggcaaagggccagaaggtcgaatcgaagagatcctagaacgcggt
cttgaaagcttagtcggtgaatttcacccattaactgatgaacaaagaaaaatcagtcct
tttatcggctacgctttgagcaataacaagaaattgcataaataccgtgtctatttgact
gaaaatggacttattccacaaatgggagacatggtaagggtatctatcaaggattatcct
gaagaagattatcctgaatcaatgactggtgcagttactaagatcattggtaacaagaat
gatccaggcgttgatattatgtcaattgtttctgcccatgatgttcgtactgattggcca
gaagatgcaatggctcaagcaaatgcaattcctgatcatgttactgaagaagaaaagaag
ggcagagttgatattactgatcaacctgcagtaaccattgatggggatgattctaaggac
tttgacgatgccgttgttttatggaaattacctaatggaaattatcatttaggtgttcac
atcgcggatgtatcacactatgtaaaagaaaatacgcctttaaatgaagaagcatttgct
cgtggcaatagtacatacttggtagaccgagttattccaatgttgccatttagactttca
aatggtatttgttcattaaatgagggcgtagaccgtcttgttttgtcctgtgatatggaa
attacaccagagggtaagagagtaggctacaagatttatccttctgttatgcgctcacac
ggccgtatgacttataacaaggttaacaagactcttaggggcgagatggatggtctagaa
gacaagtatgtaaaattacgtccaatgcttgaagaaatggccgatttgcatgctatttta
tacaagcaacggcataagcgcggtgcaattgactttgaagcacctgaggcaaaaattatt
gtcgatgatcaaggcaagccaactgaaatcgttttgcatgaacgtggtactgccgaaaag
atgattgaatcatttatgctgatggctaatgaaactgttgctgaagatttctttagaaag
cacgttccatttttgtatcgtgttcacgaaactccagatgctgaaagaattaagagcttc
tttgaattctgtagtgcatttggcttaaatattcatgctgatccagaaaacattaagcca
cttgatttacaaaaagttgtatctaagactacaggtacaccagaagaagctgtagttcaa
atgatgatgctgcgcagtttaaagcaagcacattattctgaagatgcattaggacacttt
ggtttagccgctaaatactatactcactttacttcaccaattagacgttattccgatttg
atggttcatagaatgattcatgcatatcaagaaaacgggactactgaagatatgcaaaaa
cattttgctagttatttgccagatgttgctgaacaaacttctgcccaagaacgtcgttca
attgatactgaacgtggagtaaatgacttgaagatgactgaatacatggcagaccaagtt
ggtcaacattttgatgccgtagtttcatcagtcactagttttggtatgttcattcaattg
cctaataccgttgaaggattagtgcacatctctaatttaactgatgacttctatagcttt
aatgaaaaatcattaacgttaactggtcgtggtacgcacaagcaatataagatagggatg
cctattaaagttaccttgattaatgcgaatgttgaacagcatcaattagactttgaagtc
tatgatcctaatgcgcctaagaagaagcataatgatcgaggaatgaacaatcgtcgtcac
ggcaatcttggattccacaataatcgtgggcaccgcggtggcggtaattataatagtcgt
ggcaatcgccgcaatcacggtcaaggaaatagaagaaatcaaagaaactttaagcattag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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