KEGG   Limnohabitans sp. 63ED37-2: L63ED372_01477
Entry
L63ED372_01477    CDS       T04121                                 
Symbol
ligA_2
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lih  Limnohabitans sp. 63ED37-2
Pathway
lih03030  DNA replication
lih03410  Base excision repair
lih03420  Nucleotide excision repair
lih03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lih00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L63ED372_01477 (ligA_2)
   03410 Base excision repair
    L63ED372_01477 (ligA_2)
   03420 Nucleotide excision repair
    L63ED372_01477 (ligA_2)
   03430 Mismatch repair
    L63ED372_01477 (ligA_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lih03032]
    L63ED372_01477 (ligA_2)
   03400 DNA repair and recombination proteins [BR:lih03400]
    L63ED372_01477 (ligA_2)
Enzymes [BR:lih01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     L63ED372_01477 (ligA_2)
DNA replication proteins [BR:lih03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     L63ED372_01477 (ligA_2)
DNA repair and recombination proteins [BR:lih03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     L63ED372_01477 (ligA_2)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     L63ED372_01477 (ligA_2)
   MMR (mismatch excision repair)
    DNA ligase
     L63ED372_01477 (ligA_2)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      L63ED372_01477 (ligA_2)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DUF2116
Other DBs
NCBI-ProteinID: ALK88686
UniProt: A0A0P0LQZ7
Position
complement(1542023..1544161)
AA seq 712 aa
MGPSVSPTTPDLFGDLFADSPSDSPSAETPASRAQALRRQLHHHAHAYYTLDAPEIPDAE
YDRLFRELQTLEANHPELLTADSPTQRVGGAVLDAFAQVTHRVPMLSIRTETDTEASGAK
AFDTRIRKELGLTETDPAVIYVGELKFDGLAMSLRYENGVLVQAATRGDGETGEEVTANI
RTIGQIPLRLPSDAPAVLEVRGEVYMRRDDFEALNERQRQRIAAGTKGEKTFVNPRNAAA
GAVRQLDSGIAAERPLSFFAYGLGDITPASIGGPQWTTHHDMLMQLKAWGFPVADQTACV
QGASGLVAFHQRIAAERDALPYDIDGVVYKVNDLALQTRLGFVTREPRWAVAHKYPAQEE
MTTVQAIDVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNELEARRKDVRVGDTVIVRRA
GDVIPEVVSVVLDRRPPDAAQFTMMTHCPVCGSLAEREEGEADHRCTGGLYCSAQRKQAV
WHFAHRRAMDVDGLGDKLVDQLVDAGHVNTLADLYHLKLDTLSNMDRMAEKSAVNLLAAL
EKSKTTTLGRFIFSLGIRHVGEATAKELARHFGQLDAIMVASEDALLQVADVGPVVAHSI
HTFFAQPHNREVVQALRDAGVTWPEGEALAPTEMPLAGTTVVLTGSLPSMGRDEAKEKLE
ALGAKVAGSVSKKTHYVVAGADAGSKLDKAQALGVPVLDDAGLALLLAGQRP
NT seq 2139 nt   +upstreamnt  +downstreamnt
atggggccatccgtgagtcccaccacgccagatctctttggcgacttgtttgccgattca
ccgtcagattcgccatcggccgagacccctgcgagtcgggcgcaggccctgcgacgccag
ctgcaccaccatgcacacgcgtactacacgctcgatgcacctgaaatccccgatgccgaa
tacgaccgtctgtttcgcgaactccagacgctggaggccaatcacccggagctgttgaca
gccgattcccccactcagcgggtgggcggggctgtgctcgatgctttcgcccaggtcacc
caccgggtgcccatgctcagcatccgaaccgaaaccgacaccgaagccagcggagccaag
gcttttgacacccgaattcgcaaagaattgggcttgacggagaccgatccagcagtcatc
tatgtgggcgagctcaagtttgatggcttggccatgagcctgaggtatgaaaacggcgtt
ttggttcaggcggccacccggggagatggtgaaacgggcgaagaggtcacggccaacatc
cgaaccatcggacagattccactgcgcttgcccagcgatgcgcctgctgtcctcgaagtt
cggggcgaggtttatatgcgccgcgacgacttcgaagcgctgaacgagcgacaacgccaa
cgcattgctgcaggcaccaagggcgaaaaaacctttgtcaatccacgcaacgctgccgca
ggtgcggtgcgccaactcgattcgggcattgctgccgagcggcccttgagcttttttgcg
tatggcttgggcgacatcacccccgcaagtattggcggcccgcaatggacaactcaccat
gacatgctcatgcagctcaaggcatggggctttccagtcgctgatcaaaccgcctgtgtt
cagggtgcatcaggccttgttgcctttcaccagcgcattgcggccgaacgcgatgctttg
ccttacgacatcgatggcgtggtctacaaagtcaatgatttggcgcttcagacccgcctg
ggctttgtgacccgcgagccgcgctgggccgtggcgcacaaataccccgcgcaagaggaa
atgaccacagtgcaggcgatcgatgtgcaggtggggcgcacgggcaaactcacgcccgtg
gccaaactggcgcctgtgtttgtcggcggtgtcacagtgaccaatgccacgctgcacaac
gaactcgaagcccgccgcaaggatgtgcgggtgggcgacacggtcatcgtgcgccgtgcg
ggcgatgtgattcctgaagtggtttcggtggtgctggaccgcagaccgccggatgcggcg
cagttcaccatgatgacccactgccccgtgtgcggcagtttggccgagcgcgaagagggt
gaggccgatcaccgttgcacggggggcctgtattgcagcgcccagcgcaagcaggcggtc
tggcactttgcacaccgccgcgccatggatgtggacggtctgggcgacaaactggtcgac
caactggtcgacgccggacatgtcaacaccctggctgacctctatcacttgaaactggac
acgctctcgaacatggaccgcatggccgagaaatcggcggtgaacctgcttgcagcgttg
gagaaatccaaaaccaccacgctgggccgtttcatcttcagcttgggcatccggcatgtg
ggcgaagccaccgccaaagaactggccaggcatttcggtcagcttgacgcgatcatggtt
gccagcgaagacgcgctgttgcaagtggccgatgtggggcctgtggtggcgcacagcatc
cacacttttttcgcccagccccacaaccgcgaggtggtccaagccttgcgcgacgcgggt
gtcacttggccagagggcgaggcgctggcgcccaccgaaatgccactggcgggcaccacg
gtggtgttgaccggttcgctgccaagcatggggcgcgatgaggccaaagaaaaacttgaa
gccttgggggccaaggtggccggttctgtgagcaagaaaacccactatgtggtggcgggt
gccgatgcaggcagcaaactcgacaaggcgcaggccttgggtgtgcccgtgctggacgac
gcgggattggcgctgctgctggcaggccaaagaccctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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