KEGG   Limnohabitans sp. 63ED37-2: L63ED372_02261
Entry
L63ED372_02261    CDS       T04121                                 
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
lih  Limnohabitans sp. 63ED37-2
Brite
KEGG Orthology (KO) [BR:lih00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lih03016]
    L63ED372_02261 (rnb)
Enzymes [BR:lih01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     L63ED372_02261 (rnb)
Transfer RNA biogenesis [BR:lih03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    L63ED372_02261 (rnb)
SSDB
Motif
Pfam: RNB RNase_II_C_S1 Myosin_N
Other DBs
NCBI-ProteinID: ALK89464
UniProt: A0A0N7J8Y2
Position
complement(2409947..2412007)
AA seq 686 aa
MYVFFEDAGKFMAGRIMSEAEASAQVELDSGKRVKVKSAHMLLKFEKPAPAVLLSDATAL
SQTIELELAYECAPEEEFGFGDLAKDYFSASASTTEQVAALLCLHDAPHYFRRGGAKGRF
RKAPAEIVQQALLAIEKKKQVQAQIEAWSADLIAGICPEPIREQLYKILFRPDQNTPEYK
AVVEASKSSQTAPLDLLQNAGAIASAWDFHWQRFLFDLFPKGTGFPPLQAPAITDDLPLA
SVQAFSIDDSHTTEIDDALSLQGLGTGMVTVGIHIAAPGLALQPGSPIDQLGRARLSTVY
MPGYKITMLPDSVVQAYTLIEGRDCPAVSLYVTFSEDTLEVQSSVTRLERVPILVNLRHD
QLDDRITREWLEGVDQSDHADVPVSRHTLAFFWRLAQTLKARREVVRGKPENFNRPDYSF
KLERDHNDTPPTGDETVVIGTRKRGAPLDLMVAEAMILANSTWGQWMAQLGVPGIYRSQA
SLAPGVKVRMGTKALPHAGIGVPSYAWSTSPLRRYTDLVNQWQIIACAQHGATAALAAPF
KPKDAELFSIISGFDAAYSAYNGVQSSMERYWTLRHVQQQGIEELDASLVKEMGAGTWLV
RADTLPLMFSVLGANNLPRGARVRVKLSDVDLMALDVRGTVIAHLDAEGQADSDEAEQDG
EDDDNLPAGPVTIAVDLNDNTPSNAP
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgtacgtattttttgaagatgccggcaaattcatggccggtcggatcatgtccgaagcc
gaggcctctgcgcaggtcgaacttgactccggtaaacgggtcaaggtcaagtcggcccac
atgctgctcaagttcgagaaaccggccccagccgttttgctcagtgatgccaccgccttg
agccaaaccatcgaactggagctggcctacgagtgtgccccggaggaagagtttggcttt
ggcgacctggccaaagactacttcagcgccagtgccagcaccaccgagcaagtggcggct
ttgctctgcttgcatgatgcgccgcactatttccgccgaggcggtgccaaggggcgcttt
cgcaaagccccggccgagatcgtgcagcaggccttgctcgccatcgagaagaaaaagcag
gtgcaggcccaaatcgaggcctggtcggccgatctgatcgcgggcatttgccccgagccg
atccgcgagcagctctacaaaattctgtttcgccccgaccagaatacacccgaatacaag
gccgtggtcgaggccagcaaaagcagccagaccgcgcctttggacttgctgcaaaacgcg
ggggccatcgcctcggcctgggactttcattggcagcgtttcctgtttgacctgttcccc
aaaggcacgggctttccccctttgcaggcacccgccatcaccgacgacttgccactggct
tcggtgcaggctttttcgatcgacgattcacacaccaccgaaatcgacgacgccctgtct
ttgcaaggtctgggcacgggcatggtcacggtgggcattcacatcgccgcccccggcctg
gcgctgcagccgggcagcccgattgaccagctgggtcgcgcccgcctgtccacggtctac
atgcccggttacaaaatcaccatgctgcccgacagcgtggtgcaggcctacaccctgatc
gaggggcgcgactgcccggcggtgtcgctgtacgtgaccttcagcgaagacaccctggaa
gtgcaaagcagcgtgacccggctcgaacgcgtgccgattttggtcaacctgcgccatgac
cagctcgatgaccgcatcacccgcgaatggctggagggtgttgaccagagcgaccacgcc
gatgtgccagtgagccgccacacgctggccttcttctggcggctggcgcaaaccctgaaa
gcccggcgcgaagtggtgcgcggcaaacccgaaaacttcaaccgcccggactacagcttc
aagctcgagcgggaccacaacgacacgccgcccacgggcgacgagacggtggtgatcggc
acccgcaaacgcggtgcgccactcgacttgatggtggccgaggccatgatcttggccaac
agcacctggggccagtggatggcccagctgggtgtgcccggcatttaccgcagccaggcc
agtttggcccccggagtgaaagtgcgcatgggcaccaaggcgctgccgcacgccggcatt
ggcgtgcccagctatgcctggagcacctcgccgctgcgccgctacaccgacttggtcaac
cagtggcaaatcattgcctgcgcccagcatggcgctacggccgcattggccgcgcccttc
aagcccaaagacgccgagttgttttccatcatcagtggttttgatgccgcctacagtgcc
tacaacggtgtgcagtcgagcatggagcgctattggacgctgcgccatgtgcagcagcaa
ggcattgaagagctggatgccagcctggtcaaggaaatgggcgctggcacctggctggtg
cgtgccgacaccttgccgctgatgttcagcgtgttgggtgccaacaacttgccccgcggc
gcacgggtgcgtgtcaagctgtccgatgtcgatctgatggctctggatgtgcggggtacc
gtgatcgcccacttggatgccgaaggccaggcagattctgacgaggcggaacaagacggc
gaggatgatgacaacctgcccgctggccccgtcaccatcgcggtggatctgaacgacaac
accccctccaatgcgccctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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