KEGG   Listeria ivanovii subsp. ivanovii WSLC 3010: JL52_06765
Entry
JL52_06765        CDS       T03400                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lii  Listeria ivanovii subsp. ivanovii WSLC 3010
Pathway
lii03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL52_06765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lii03019]
    JL52_06765
   03016 Transfer RNA biogenesis [BR:lii03016]
    JL52_06765
Enzymes [BR:lii01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     JL52_06765
Messenger RNA biogenesis [BR:lii03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     JL52_06765
Transfer RNA biogenesis [BR:lii03016]
 Prokaryotic type
  tRNA degradation factors
   JL52_06765
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 RNase_II_C_S1 S1_2 KH_2 SPATA25 CvfB_2nd RICTOR_M DUF1773 SduA_N
Other DBs
NCBI-ProteinID: AIS65271
Position
1385704..1387875
AA seq 723 aa
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
THDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPE
LEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEVLSEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQPEGDKKPQAEKKYYPKKDKP
ESK
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgtctgaaaaacaagtattttcaacagaatgggcaggtaaaacattatctgtcgaagta
ggtcaattagcaaagcaagcaagtggagcagcattaattcgttacggagatacagttgtt
ttaacagcagctgtaggttcaaaaaaaccacgtccaggtgactttttcccgttaacagtt
aactatgaagaaaaaatgtactctgtcggtaaagttcccggtggattcttaaaacgtgaa
ggacgtccaagcgaccgtgcaacattaacagctcgtttaattgaccgtccaattcgtcca
ctttttgcagaaggtttccgtaatgaagttcaaatcacttccacagtattcagtgtagac
caagattgctcaccagaaatggcagcaatgttaggatcatctgtagcgctcgtgatttct
gatattccatttgatggcccaattgcaggtgtggatgttggtcgcattgatggcaaatac
gttatcaacccaactattgaacaagcagaaaaaagtgatattagcttaacagttgctggg
acacatgatgcaatcaacatggtagaagcaggagcgaaagaagtttcagaagaagcaatg
cttgaagcgattatgtttggtcatgaagaaattaaacgtctttgtgaattccaacaacaa
attattgacgctgttggaaaagaaaaacgcgaaatcgaattatttgtaagcgatcctgaa
cttgaagcagaagtaaaagcagcaagtgaaggtaaaatgaaagcagcaatcaaaacagaa
gagaaaaaagctcgtgaagctgctattgaggatgtaaaagaagaaattttagaaagttac
aaagcgaaagaacttgaaaatgaagcagaagttcttagtgaagtagcacatattttagaa
atgattgaaaaagatgaaatgcgtcgtcttatttctcaagataaaattcgtccagatggt
cgtaaagtaaacgaaattcgtccgctttcttctgaagttggtttacttccacgcgtccat
ggttctggtttatttactcgtggacaaacccaagctttaagtgtttgtacgcttgctcca
ttacgcgaacaccaaattattgatggcttaggaacggaagaatacaaacgtttcatgcat
cattataatttcccgcaatttagtgttggggaaactggtcctcgtcgtgctcctggtcgt
cgtgaaatcggtcacggtgctttaggtgaacgtgctttacaatatgtaatcccttctgaa
gaagatttcccatacactattcgtcttgtatcagaagtacttgaatcgaatggttctagt
tctcaagcaagtatttgtggatctacacttgctatgcttgatgcgggtgtgccaattaaa
gcaccagttgcaggtatcgcaatgggacttgtgaaactgggcgatgattacactatcctt
tcagatatccaaggtatggaagatcattttggcgacatggatttcaaagttgctgggaca
aaagatggtatcactgcacttcaaatggacattaaaattgacggattaagccgccaaatt
ttagatgaagcattaactcaagctaaagaaggtcgcttgcatatcctggaacacttaaca
agcacaattagcgcaccacgcgaagaactttctgcgtatgcaccaaaaattattaccctt
aacattaaaccagaaaaaattaaagatgttattggacctggtggaaaacaaatcaatgca
attattgaagaaactggcgtgaaaattgatatcgagcaagatggtacagtttatattgct
tctcaagaccaagcaatgaaccgtaaagcgattgcgatcattgaagacattgttcgcgaa
gttcaagtaggggaagtttacacaggtaaagttcgtcgtattgaaaaatttggtgcattt
gttgaattattcaaaggaacggatggtttagttcatatttctgaattagcacatgaacgc
gtaggaaaagtagaagatatcttaaaacttggtgatgaagttactgtgaaagttatcgaa
gtcgatcatcaaggccgtgttaacttatcgcgtaaagtattacttgagaaaaaagaacaa
ccagaaggcgataaaaaaccgcaagctgagaaaaaatactatcctaagaaagacaagcct
gaatctaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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