KEGG   Limnohabitans sp. 103DPR2: L103DPR2_00397
Entry
L103DPR2_00397    CDS       T04120                                 
Symbol
spoVD
Name
(GenBank) Stage V sporulation protein D
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
lim  Limnohabitans sp. 103DPR2
Pathway
lim00550  Peptidoglycan biosynthesis
lim01100  Metabolic pathways
lim01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:lim00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    L103DPR2_00397 (spoVD)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    L103DPR2_00397 (spoVD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:lim01011]
    L103DPR2_00397 (spoVD)
Enzymes [BR:lim01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     L103DPR2_00397 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:lim01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   L103DPR2_00397 (spoVD)
SSDB
Motif
Pfam: Transpeptidase PBP_dimer bDLD3
Other DBs
NCBI-ProteinID: ALK90810
UniProt: A0A0P0MD61
Position
complement(433354..435348)
AA seq 664 aa
MALHLPSLSELRNTEFEIFKFQTRVMVLQGVVLLCFALLGIRLFYLQVIRHEDLLEQAEN
NRTAILPTVPNRGTIMDRNGVVLANNYSAYTLEITPSRVKDLEATIDSLSEIIDIPLRDR
RRFKRMREESKNFDSLPIRSRLTEEEVAKFSAQHYRFPGVEIKARLFRNYPYGHLASHVV
GYIGRINQKEKEQIEESDDEGNYRGTQYIGKLGVEQRYERELHGITGVQEVETSAGGKAV
RRLASRPATPGQNVVLSLDIKLQKMVEDLFGDRRGALVAMDPRTGEVLAFVSKPTFDPNL
FVDGIDSESWKALSESIDKPLLNRAIRGTYPPGSTYKPFMALAALETGKRSASEIINDQG
SWNYGGHTFRSHGDTGLGPVDMVRSIVLSSNVYYYSLANTMGVDAIHDFMKPLGFGQITG
IDLPGEVRGVLPSTQWKKNTYKKAEQQRWYGGETISLGIGQGYNAFTMLQLATATATLAN
GGVVRKPRLVMATQDPIARVDRSVAGEAPLNLGFKPENVAVVKQGLIGVAKEGTSARVFA
GTPYQSAGKTGTAQAVTIGQKDKYNASKLEEHQRDHALYMAFAPADEPQIALAIVVENAG
FGAAQAAPIARRVFDYWLLGDYPSIEDIEASQKGLAASPVGVRRRKEDILLTPSEGVVGV
MGNR
NT seq 1995 nt   +upstreamnt  +downstreamnt
atggcgctgcacctgccctcgttaagcgagttgcgcaacaccgagtttgagattttcaaa
tttcaaacgcgcgtgatggtgctgcaaggcgtggtgcttttgtgttttgctttgttgggc
atccgcctgttttatttgcaagtcattcggcacgaagacttgttagagcaagcagaaaac
aatcgcaccgccatcttgcccacagtgcccaatcgcggcacgatcatggaccgcaatggc
gttgtgttggccaacaactactcggcctacacactcgaaatcacaccttcacgcgtgaag
gacctcgaagccaccatcgacagtttgtctgaaatcatcgacatcccactgcgcgatcgt
cgtcgcttcaaacgcatgcgagaagagtctaagaactttgactcactgcccattcgttca
cgtctcacagaagaagaagtggccaagttctctgcgcagcattaccgctttccgggtgtt
gaaatcaaagcgcgtttgttccgcaactacccctatggtcatttggccagccacgtggtg
ggctacatcggccgcatcaaccaaaaagaaaaagaacaaattgaagagagcgatgacgaa
ggcaactaccgcggtacccaatacatcggcaagttaggcgtagaacaacgctacgagcga
gaactgcatggcatcaccggtgtgcaagaagtcgaaacctcggcaggcggcaaagccgtg
cggcgactggccagcagacccgccacgcctggccaaaacgtggtgctgtcactcgacatc
aaattgcaaaagatggtggaagacttgttcggcgatcgtcgcggtgctttggtggccatg
gacccacgcaccggcgaagttttagccttcgtcagcaagcccaccttcgatcccaattta
tttgtcgatggcatcgacagtgaaagctggaaagccttgagtgagtcgatcgacaagcct
ctgctgaaccgggccattcgcggcacttacccaccggggtccacctacaaacccttcatg
gccttagcggcactcgaaacaggcaaacgcagcgccagcgaaatcatcaacgaccaaggc
tcgtggaactacggcggtcacacctttcgaagccacggcgatacaggccttgggcctgtt
gacatggttcgctccattgtgttgtccagcaatgtgtactactactcattggccaatacc
atgggcgtggatgccattcacgacttcatgaagcctttgggttttggtcaaatcacaggc
atcgatttaccaggtgaagtgcgcggcgtcttgccaagcacccaatggaaaaagaacacc
tacaagaaagccgagcaacaacgttggtacggcggtgaaaccatctccctgggcattggc
caaggttacaacgccttcaccatgctgcaattggccacggcaacggccaccttggccaat
ggcggggtggtgcgcaaacctcgcttggtcatggccacacaagaccccattgcacgtgta
gaccgaagtgtggccggtgaggcgcctctcaacttaggcttcaagcctgagaatgtggct
gtggtgaaacagggtttgattggcgtggccaaagaaggcacctctgccagagtgtttgcg
ggcacaccctaccaaagtgcgggcaaaaccggcaccgcacaagccgtcaccattggccaa
aaagacaagtacaacgccagcaaattggaagagcatcagcgtgaccacgccttgtacatg
gcctttgcaccagctgatgaaccgcaaattgccttggccattgtggtggaaaacgccggc
tttggtgctgcccaagccgcgcccattgccagacgtgtttttgactattggctattaggc
gactaccccagcatcgaagacattgaagcctcgcaaaaaggtttggccgcatcacctgtg
ggcgtgcgcaggcgaaaagaagacatcttgttgacacccagtgaaggggtggtcggcgtg
atgggcaaccgataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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