KEGG   Limnohabitans sp. 103DPR2: L103DPR2_01730
Entry
L103DPR2_01730    CDS       T04120                                 
Symbol
ligA_3
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lim  Limnohabitans sp. 103DPR2
Pathway
lim03030  DNA replication
lim03410  Base excision repair
lim03420  Nucleotide excision repair
lim03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L103DPR2_01730 (ligA_3)
   03410 Base excision repair
    L103DPR2_01730 (ligA_3)
   03420 Nucleotide excision repair
    L103DPR2_01730 (ligA_3)
   03430 Mismatch repair
    L103DPR2_01730 (ligA_3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lim03032]
    L103DPR2_01730 (ligA_3)
   03400 DNA repair and recombination proteins [BR:lim03400]
    L103DPR2_01730 (ligA_3)
Enzymes [BR:lim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     L103DPR2_01730 (ligA_3)
DNA replication proteins [BR:lim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     L103DPR2_01730 (ligA_3)
DNA repair and recombination proteins [BR:lim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     L103DPR2_01730 (ligA_3)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     L103DPR2_01730 (ligA_3)
   MMR (mismatch excision repair)
    DNA ligase
     L103DPR2_01730 (ligA_3)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      L103DPR2_01730 (ligA_3)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH TF_Zn_Ribbon BRCT_2 RUBY_RBDX Auto_anti-p27
Other DBs
NCBI-ProteinID: ALK92129
UniProt: A0A0P0MGB1
Position
1762684..1764801
AA seq 705 aa
MNLDLFSDPNDGKASPAADVAEQAANLRRQLHHHAHCYYTLDAPEVPDAEYDRLFRALQA
LESAHPHLRTPDSPTQRVGGAVLPEFQTVRHQVPMLSIRTETDTESSGAIAFDTRVRKEL
ALSDADPAVDYVAELKFDGLAMSLRYEHGVLVQAATRGDGEFGEDVTHNIRTIGQIPLQL
PSDVPDVLEVRGEVYMRRDDFESLNERQRQKIAEGAKGEKTFVNPRNAAAGAVRQLDSNI
AAQRPLSFFAYGLGEVKEGSSAFQAFQTHYELLQSLKRWGFPVAEQTRCVQGAEGLIEFH
AQIAAERDALPYDIDGVVYKVNSLGLQAQLGFVTREPRWAVAHKYPAQEEMTQVLDIDVQ
VGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARRKDVRIGDTVIVRRAGDVIPEVVSV
VLDQRKPEALVFTMPKICPVCGSPALRDEGEADYRCNGGLFCKAQQKQAFLHFAQRRAVE
VDGLGEKLIDQLVDAGIVNTLPDLYKMGLTALVQLDRMAEKSAFNILKALEASKSTTLPR
FIYGLGIRHVGEATAKEFARHFGTLDAFMNADEESLLQVADVGPVVAKSVITFFAQAHHQ
EIVAQLRACGVHWDEGPPAERQLQILSGKTVVLTGTLPTLSRDAAKEMLEAAGAKVAGSV
SQKTSYVVAGAEAGSKLDKAVALGIPVLDEAGLIQLLQGNQDDSA
NT seq 2118 nt   +upstreamnt  +downstreamnt
gtgaatctagatttattttcagatcctaacgatggcaaagcgtcacctgctgcggatgtc
gctgagcaagcagcgaacttaagaagacagcttcaccatcacgcgcattgctattacacc
ctcgatgcgcccgaggtacctgatgctgaatacgatcgtttgtttcgtgctttgcaagct
ttagagtctgcgcacccccacctgagaacacccgattcaccgactcaacgcgtcggcggc
gcggtgttgccagaatttcagacagttcgacatcaagtcccgatgttgagcatccgcaca
gagaccgataccgaatccagcggcgccattgcatttgatacacgggtgcggaaagaactg
gccctgagcgatgccgatcctgcagttgactatgttgctgaattgaagtttgatggcttg
gccatgagcttgcgttacgagcatggtgtgcttgttcaagccgccacacgcggtgatggt
gagtttggtgaagatgtgacgcacaacattcgaaccatcggtcaaatacctttgcaactg
ccatcagacgttccagatgttttggaagttcgtggcgaggtttacatgcgccgtgatgac
tttgagtccttgaatgagcggcagcgtcaaaaaattgcggaaggcgccaaaggggagaaa
acttttgtcaatccacgcaatgccgctgcaggggctgttcgccagttggactccaacatc
gctgcacagcgtcctttgagtttttttgcgtatggtttgggcgaggttaaagagggctcg
tcagcatttcaagcctttcaaacgcactatgaattgcttcaaagcctaaaacgctggggc
tttcctgtcgcagaacaaacgcgctgcgttcaaggcgcggaaggtttgattgaatttcat
gcgcaaattgccgctgaaagagatgccttgccctatgacattgatggcgtggtttacaaa
gtcaattctcttgggcttcaagcgcagttggggtttgtgacgcgcgagcccagatgggct
gtagcacacaagtacccagcccaagaagaaatgacacaggtattggacattgatgtccaa
gtgggacgcactggcaagttaacacccgtcgccaaattggcccccgtgtttgtgggtggt
gtcactgtgaccaacgcaaccttgcacaatgaagatgaagcccgtcgcaaagatgtgcga
ataggtgatacggtcattgttcgccgtgcgggggatgtgattcctgaggtggttagcgtg
gtcttggaccagcgcaagcccgaagcgctggtattcaccatgcccaaaatttgccccgtt
tgcggcagtcctgcactgagggatgagggtgaagcagactaccgttgcaatggtggattg
ttttgcaaagctcagcaaaaacaggccttcctgcatttcgcccagcgccgcgccgtagag
gtggacggcttgggtgaaaaattgattgatcaattggtcgacgcagggatcgtcaatacc
ttgcctgatttgtacaagatgggtctgaccgccttggttcaactcgatagaatggctgaa
aagtcagcattcaacatactcaaggcattagaagcttcaaagtccacgacgctgccacgt
ttcatttacggcttgggtattcgtcacgtcggtgaggcgacagccaaagaatttgcaagg
cacttcggtaccctggatgctttcatgaatgccgatgaagagtcacttttgcaagttgca
gatgtcggccctgtggttgccaaaagtgtcatcactttttttgcacaagcccaccatcaa
gaaatcgtggcccaacttcgtgcatgtggtgttcattgggatgaggggccaccagcagaa
cgacagttgcaaattttgtcgggtaaaacggtggtattgaccggaactttgcctaccctc
agccgtgatgcagccaaagaaatgctggaagctgcgggtgccaaagttgcgggttccgtt
agccaaaaaaccagttatgtggtggcgggtgcagaagccggcagtaaattagacaaagcg
gtagcccttggcattccagttttggatgaggcgggcttgattcaattgcttcaaggaaat
caagatgacagtgcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (37)   

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