KEGG   Listeria innocua (serotype 6a): lin0195
Entry
lin0195           CDS       T00067                                 
Name
(GenBank) similar to ATP dependent helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
lin  Listeria innocua (serotype 6a)
Pathway
lin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    lin0195
  09124 Replication and repair
   03420 Nucleotide excision repair
    lin0195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lin03021]
    lin0195
   03400 DNA repair and recombination proteins [BR:lin03400]
    lin0195
Enzymes [BR:lin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     lin0195
Transcription machinery [BR:lin03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     lin0195
DNA repair and recombination proteins [BR:lin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     lin0195
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD Helicase_C DUF3470 ResIII
Other DBs
NCBI-ProteinID: CAC95428
Pasteur: LIN00195
UniProt: Q92FB1
Position
184384..186723
AA seq 779 aa
MKNVQISVRRLVEFVLKSGSIDSRMTSSDRALEGTKIHQLLQKEAGEGYEAEVSLKLVRV
IDDISFTLEGRADGVINGEMIDEIKTTEVEMDEITEDFRPLHWAQLICYGFMLAEKSDLA
EVTLQLTYYQVADKEVKQFTRVMSRKEMSTFVDDLLSKYAIWAKMSAAWEMKRNKSIQEL
TFPYDSYRRGQRELAIAVYRTVMDDEKLFCEAPTGIGKTMSTLFPSVKAMGEGKADKLFY
FTAKTITRQVAEDALDEMRRKGLGARSVTITAKDKICFLDERKCDPEHCQFARGYYDRLN
EALFDMLQTEETITRSVVEAFARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF
FADGPGRYTFLVDEVHNLVDRARSMFSATLSKSIIMQVKRELDKKTDKKLLNSVTAMNKI
MIALNKQLAEENKTIYVKKEALSDWNEAVLKFSYVAKDWLPKNTEAKAQADVLELYFESL
RYLKIAELYDKRYVTQITRNRSDVLIKQLCLDPAFLLSEKLKLGASSVLFSATLRPIDYY
TNLLGGNNDTSRLTFASPFKQNNMHLMVADYISTKYQRRENSLESVIDALYAMLSGKKGN
YLFFFPSFQYLETAFELFSEKYPEVRAQKQQSFMNEAEREEFLAAFETGREETFVGFCVL
GGVFSEGVDLRGERLIGTAIVGVGLAQMNVESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRGEKDQGVVLLIEERFATERYKALFPAHWNHARTVKNTLQIEREVNEFWRNN
NT seq 2340 nt   +upstreamnt  +downstreamnt
atgaaaaacgtacagatctcagtgaggcgcttagtagaatttgtcttaaaaagcggcagt
attgatagccgaatgactagttcagatcgcgctttggaagggacgaaaattcatcaatta
ctccaaaaagaagcaggagaaggatacgaagccgaggtatcattaaagcttgtacgagta
atagatgacatttcttttacacttgaaggccgagcggatggcgtcataaacggagaaatg
atagatgagattaaaactaccgaggtagaaatggatgaaattactgaagactttcgcccg
ctgcactgggcccagctcatttgttatggattcatgttagcggagaagtctgatttagca
gaagtcacgcttcaattaacgtactatcaagtagccgataaagaagtgaaacaattcact
cgagtcatgagtcgtaaggaaatgagtacttttgtggacgatttgctttcaaaatatgct
atttgggcaaaaatgtctgcagcttgggaaatgaagcgaaataaatctattcaagaatta
actttcccatatgacagctatagacgtggtcaaagagagctagcaattgccgtttatcgg
acagtgatggatgatgaaaagctattttgtgaagcgcctacaggcattggaaaaacaatg
tcgacgctatttcccagtgtaaaagcaatgggcgaggggaaggcagacaagcttttttat
tttacagcaaaaacaattacgagacaggttgccgaagatgctttagatgaaatgcgccgt
aaaggactaggggcaagaagtgttacaatcacagcaaaagataaaatatgctttttagat
gaacgaaaatgtgacccggagcactgccaatttgcgcgtggctattacgatcgcttgaat
gaagcgttgttcgatatgctgcaaacagaagaaactataactcgatcggtcgtcgaagca
tttgcccggaaatatactttatgtccgtttgagttatcgcttgatgtggcgcttttttgt
gatgtaattgtgtgtgattataactatttatttgacccagtcgtttatttgaaacgtttt
tttgcggatggacctggcagatatacttttctagtggatgaagtgcataatttagtagac
cgagctcgttcgatgttctcggcgacattaagtaaatcaatcatcatgcaagtaaaacgt
gaattagacaaaaaaaccgataaaaaactactaaattcagtaacggcaatgaataaaata
atgattgccctaaataagcaactagccgaagaaaataaaacgatctatgttaaaaaagaa
gccttgtccgattggaatgaagctgttttaaaatttagttatgtagcaaaagactggttg
ccaaaaaatacagaggcaaaagctcaagcagatgtactggagctttattttgaaagttta
aggtatttaaagattgctgagttatacgataagcgctatgtcactcaaattacgcggaat
cggtccgatgtgctgataaaacaactatgcttagatccggcgtttttactatcagagaaa
ttgaaattaggtgctagttcagtacttttttcggcgacgcttagaccgattgattactac
acgaatttacttggtggaaataatgatacaagtcgtcttacttttgcgtctccgtttaaa
cagaataatatgcatttaatggtagcggattatattagtacaaagtatcaaaggcgtgaa
aatagcttggaatcagtgattgatgcgctttatgcgatgctttccgggaaaaaaggcaat
tatttgtttttctttccatcattccaatatttagaaacggcatttgaattgtttagcgaa
aaatatcccgaagtgcgagcgcaaaaacaacaatcttttatgaacgaagcagagcgcgag
gaatttctagcagcttttgaaacggggcgtgaagaaacgttcgtcggtttttgtgtctta
ggaggcgttttttctgaaggcgttgatcttcgaggggaacgcttaattggaacggcaatc
gtaggcgtgggacttgcgcaaatgaacgttgaatctgatttaattaaagattattataat
gaaacaatcgggcgcggatttgattatgcgtatcagattcccggtatgaacaaagtcctt
caagcggtaggacgtgttattcgcggcgaaaaagatcaaggcgttgtcttactgatagaa
gaacgttttgcaacagaacggtataaagctttgtttccggctcattggaaccatgccagg
acagtgaaaaatacgctgcaaatcgagcgagaagtaaacgaattttggcggaacaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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