KEGG   Listeria innocua (serotype 6a): lin2368
Entry
lin2368           CDS       T00067                                 
Name
(GenBank) similar to ATP-dependent deoxyribonuclease (subunit A)
  KO
K16898  ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
Organism
lin  Listeria innocua (serotype 6a)
Brite
KEGG Orthology (KO) [BR:lin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lin03400]
    lin2368
Enzymes [BR:lin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     lin2368
DNA repair and recombination proteins [BR:lin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    AddAB pathway proteins
     lin2368
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 DEAD AAA_12 ResIII DUF2059 DsrD
Other DBs
NCBI-ProteinID: CAC97595
Pasteur: LIN02368
UniProt: Q929A9
Position
complement(2398610..2402317)
AA seq 1235 aa
MRLNIPTKPEDALWTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNV
DELLIVTFTNVSAAEMKYRIGKSLEEALVQNPESVHLKKQVALLNYASISTLHSFCLEII
RKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEKEYSIENNEGFFHLVESFTGDRSDAE
LHTLISKLYDFSRANPNPDLWLEQMVSFYDTQAITSITELPYFPIIKEDIQLRINQAKSY
LLTAIDYANENNGPAPYLSTLENDLAQINTLSSISWDNWQDVKFGFESIDFKRIPALKNK
ADFDEEYVEEAKKFRDAAKKEVKNVLIDWFSREEENYLSDLEKMKPDIKTLSELVKKFAE
NFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEVLIDEYQDTNMVQETI
LLLVTNSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAKYQEYQQDGEGSGIRIDLSQNFR
SRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLGASFPEANNMATELLLIDMKSEEKES
EDELSPQELQKNQVESRAIATKIREMIDNKFPIYDKKLQQNRPIQYRDIVILARAMTSAP
DMEEAMKIKDIPFYANNNSGYFETTEVATMIALMKVIDNPYQDISLAAVLRSPIIGLNEE
ELGQIRMAKKKGYFFDAMLAYKDITVSDAANKISRFITQLNNWRELSIRENLTALIWQIY
QETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTA
KTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIE
KMIVYPTIMQQAIKQKKYREMIAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVS
NQQETILPAAIRAKAKCYLDWIGNATIRHSHFKELLCEEKIKTLPTDMKLQVEIKTKEMF
LTDDLEKEKSDNWMENVKAHKQVPVKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKR
QFSLQDSWSDTSILKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKDL
VSLLQLMREKDILTEAQIKAINVNQIIAFFESALGKTVLQKKDKVKREVPFSYLLPAAKL
YNQTNLDEHVLIQGVVDSMIEEEDSIILIDYKTDKIEGRYDNWEAAEKVMKERYQIQIKL
YAEAIQAISRKKVSHAYLYFFDGQHICQINIEEGI
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgagattaaatataccaaccaaaccagaagatgctttatggactgatgaccagtggaaa
gccatccaagcaaatggaaacaatattcttgtagcagctgctgcgggctctggtaagaca
gctgttttagttacaagaatcattgaaaaactaataaatgaaacagaaaatctaaacgtt
gatgaattgttaattgtaacttttaccaatgtttcagctgcagaaatgaagtatagaata
ggtaaaagtttagaagaagcattagtgcaaaatccggaatctgtacatttaaaaaaacaa
gttgcattactaaactatgcctctatctcgactttgcattcattttgtttggaaatcatt
cgaaaacattattttgaagctgatattgatcctaatttccgtttgattgaacccatcgaa
agcagtatgattcgtgatgaagttttagaggacctgttagaaaaagaatatagtatagaa
aataatgagggcttttttcatctagttgaatcgtttactggggatagatctgatgcggag
ttgcatacgctaatctcgaaactttatgatttctctagagcaaatccaaacccggattta
tggttagaacaaatggtaagcttttacgatacacaggcgattacttctatcacggaatta
ccttattttccaattattaaagaagatattcaacttagaattaatcaagctaaaagttac
ttgttaaccgccatagactatgcaaatgaaaataatggaccagctccttatttaagcaca
ttagaaaatgatttagcacaaattaacactttatcaagtattagctgggataattggcaa
gatgtgaaatttggctttgagagcattgatttcaaacgaatacctgcccttaaaaataaa
gctgattttgatgaagaatatgtagaagaagcaaaaaaattccgtgatgctgcaaaaaaa
gaagtgaaaaatgttttaatagattggttttcaagagaagaagaaaattatttaagtgat
ttagaaaaaatgaaaccagatattaaaacgttaagcgaattagtgaaaaaatttgctgaa
aacttttttgaggaaaagcaacaacgtggggtattagactttaatgacttagaacattta
gctttaaaaatcctcttaaaaaatggcgcgccctctgatgtggcaaatagttataaaaaa
cagttcaaagaagtattaattgatgaatatcaagatactaatatggtacaagaaactatt
cttttgcttgtcactaattcgaatgatacaaaaggaaacttgtttatggttggggatgta
aagcaatcaatttatcgctttcgattagcggaaccaactttgttcatggcaaagtatcaa
gaatatcagcaagacggagaaggcagcggaatacgaatagatttatctcaaaactttaga
agtaggaaagaagttcttgatgctaccaattttatttttcatcagttgatggataagcat
attgcagaaatcgattatgatgaggcagctgagttaactttaggagctagttttcctgaa
gctaacaatatggcaacagaacttttgttaattgatatgaaatcagaagaaaaagaatct
gaggatgaattatcgccacaagagttgcaaaaaaatcaagttgaatcaagagcgattgcg
acaaaaattagagaaatgatagataataagtttccaatttatgataaaaagttacaacaa
aatagacccattcaatacagagatattgttattctagcaagagctatgacgagtgcgcca
gatatggaagaagcaatgaaaataaaagatatacctttctatgccaataataattctggt
tatttcgaaacgactgaagtagcaacaatgattgcactaatgaaagtaatcgataatcca
tatcaagatatttcactagcagcagttctacgttctccaataatcggtttaaatgaagaa
gaattaggacaaattcggatggcgaagaaaaaaggctatttttttgatgcgatgctagct
tataaagatattacagtttcggatgcagcaaataaaattagtcgttttataacacaatta
aacaattggcgtgaactgtctattcgggaaaatttgactgccttaatttggcaaatctat
caagaaacaaacttctatgaatttgtaggcgggttaccaggcgggaaacaacgtcaggct
aatttacgcgctttgtatgatcgtgcgaatcaatatgaaaaaacttctttccgagggtta
ttccgttttgtgcgttttgttgagcgattagaagttcgtggagatgatctaggtacagca
aaaacgctaggtgaaaaagaagatgttgtgcgtatgatgacgattcatgcaagtaaaggt
ttggagtttccggtagttatagtttcaggattaagtagaaaatttaatatgcgtgacatt
tatagtaaaacacttttagacaaagactatggttttgcttctaattatcgagatatagaa
aagatgattgtctatccaactatcatgcaacaagcgattaagcaaaaaaaataccgagaa
atgattgcggaagaaatgcgtgttttatacgttgcacttactcgtgcggaagaaaaacta
attttaactgcaactgttccagattttgaaaaaacaagtaaaaattggttacaagtaagt
aaccaacaagaaactattttacccgcagcaattcgagcaaaagcgaagtgttatttagat
tggattggaaatgctacaatccgccacagccattttaaagaattattgtgcgaagaaaag
attaaaacactgccaactgatatgaagcttcaagttgaaattaaaacgaaagaaatgttc
ctaactgatgacttggaaaaggaaaaatcagataactggatggagaatgtaaaagcacat
aagcaagtgccagttaaaagtccatataaggatgaaattgagcgttttatgcattaccaa
tataaagatgaggaagccactggaattcgtgctaagcagtctgtgacagagcttaaaaga
caattctctttgcaagatagttggagtgatacatctatcctaaaagaattccaaaaagta
tctttagaccgacctaaatttttgcaacaaaataagttgtcagctacggaaattgggacg
gcaatgcatacgttaatgcaagctgtaccattagatgataaaccgaccgaaaaagattta
gtctcattattacaattaatgagagaaaaagatattcttacagaagctcaaattaaagct
atcaatgttaatcaaattattgcgttctttgaatcagctctaggaaaaaccgttttgcag
aaaaaagataaagtgaagcgtgaagttccattcagttacttacttcctgcagcaaaatta
tacaatcaaacaaatcttgatgaacacgtgctcattcaaggtgttgttgatagcatgatt
gaggaagaagactccattattttaatcgattacaagacagataaaattgaaggacgatat
gataactgggaagccgctgagaaagtaatgaaggaacggtatcaaattcaaattaaactt
tatgcggaagctattcaagcaattagtaggaaaaaagtttctcatgcatatttatatttt
ttcgacggacaacatatttgccaaataaacatagaggaaggtatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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