KEGG   Lawsonia intracellularis PHE/MN1-00: LI0904
Entry
LI0904            CDS       T00354                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lip  Lawsonia intracellularis PHE/MN1-00
Pathway
lip03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LI0904 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lip03021]
    LI0904 (rpoB)
   03400 DNA repair and recombination proteins [BR:lip03400]
    LI0904 (rpoB)
Enzymes [BR:lip01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LI0904 (rpoB)
Transcription machinery [BR:lip03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LI0904 (rpoB)
DNA repair and recombination proteins [BR:lip03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LI0904 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: CAJ54958
UniProt: Q1MPW9
Position
complement(1123545..1127711)
AA seq 1388 aa
MSLDELFTVRSTATANATQIRNLKAIQISIASPENIREWSYGEVKKPETINYRTFKPERD
GLFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHI
WFLKTLPSKIGTLLDMAMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIEHINE
ESFVVGMGAEAIRGLLEELNLETLRNSLREESQSTKSQTKKKKLTKRLKVVEAFIESGNR
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKIVEREELVVWDILS
DVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCAAYNADFDGDQMAVHIPLS
VEAQVECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVERSFEKGEGMVFCAPWEV
ISAIDNNQVNIHAKIKVRMEDGNIYNTTAGRILVWEGLPKGLKFEYVNCVLTKKNIATLV
GNAYRDAGIKATVILCDRLKDIGYEYATRAGITIGVKDLIIPATKKTIIDTATSEVDDIE
RQYRDGIITRTEKYNKVVDVWTKATQDISSEMTKEISTEVVKDPKTERTEVNQSFNPIFM
MSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLTVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVYKNDCGTVDGIEVKQVQDGGEIKQNLSERILGRVL
LYPIYHPVTNEIIFPENTLIDEYVVKKLEEIGIASVTIRSALTCQSERGVCALCYGRDLA
RGHLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSNFEALHSGRIVLTRVK
SVENRDGVHLVIGKSGQLSIVDEQGRERERYSLPNGARLYVKEGQEVTKGTFLAEWDPFN
EPFVSEVNGFIKFTDLIDGKTYQEKLDEATHQSSMTIIEYRTTSFRPSISICDAEGQTKQ
RITSTTPAIYSLPAGAIIMVKDGQEVQAGDIIARKPRETSKTRDIVGGLPRVAELFEVRK
PKDMAVVSEIAGIVTYAGESKGKRKLIVTPEIGDPKEYLIPKGKHINVSDGDFVEAGDLL
TEGHPELHDILKTRGEKYLAAYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLRKITVTNPG
GTTFLVGEQVDKGDFKEENQKIVEEGLEPATAEPLVLGITQASLTTSSFISAASFQETTK
VLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYMELDIVVPEQKERPNKFLEELEER
PVLIEIDS
NT seq 4167 nt   +upstreamnt  +downstreamnt
atgagccttgatgaactttttactgttcgtagtacagcaactgcaaatgctacacaaatt
cgtaatcttaaagctattcaaatttctattgcttctcctgagaatattagagaatggtca
tatggtgaagttaaaaaaccagagactattaattatcgtacatttaaaccagaacgcgat
ggtttattttgtgctaaaatttttggacctgttaaagattacgaatgcaactgtggtaaa
tataaaagaatgaaacaccgtggtattgtctgtgaaaaatgcggtgttgaagttattgct
tctaaagtaaggcgtgagcgaatgggtcacatagaacttgcagctccagttgcacatata
tggtttctcaaaactctaccatctaaaattggtacccttcttgatatggctatggcagat
cttgaaaaagttttatattttgactcatatattgtacttgatccaggctctactaactta
acaaaaatgcaagttatttctgaagatcaatacttacaagtcatagagcatattaatgaa
gaatcttttgttgtaggaatgggtgctgaagctatacgtggacttttagaagaattaaat
cttgaaacactgcgtaactccctacgtgaagaatctcagtcaactaaatcacaaacaaaa
aagaaaaaacttaccaaacgtcttaaagttgtagaagcctttattgagtccggaaaccga
cctgaatggatgattatggaggttatacctgttattccaccagaattacgtccccttgtt
cctcttgatggaggacgttttgcaacatctgacttaaacgatctatatcgtagagttatt
aatagaaataatcgtttaaaacgacttatggagcttggtgctccagaaattattattcgt
aatgaaaaacgaatgcttcaagaagccgttgacgctctttttgataacggacgtcgtgga
cgtgctattgcaggcacaaatggtcgacctttaaaatcactctctgacatgattaaagga
aaacaaggtcgattccgtcaaaacttacttggtaaacgagtagattattctggacgttca
gtcattgttgtaggtcccaagttaaaactacatcaatgtggattacctaaaaaaatggca
ctagaactgtttaaaccttttatttactctgaacttgaaaaaagagggcatgcatctact
atcaaaagtgccaaaaaaattgttgaacgtgaagaacttgttgtatgggatatcctttct
gatgttgttcgtgaatacccaatactacttaatcgtgcccctacccttcacaggctagga
attcaagcctttgaacctctccttgttgaaggaaaagcaattcaactccatcctcttgtt
tgtgcagcatataatgcagactttgatggcgaccaaatggctgtacatatacctttatca
gtagaagcacaggtagagtgtcgtgtgcttatgatgagtacaaacaatattctctctcct
gcaaatggctcacctgttattgtaccatcacaagatattgttctaggtctttattatatg
actgtagaacgctcttttgaaaaaggtgaaggaatggttttctgtgccccatgggaagtt
atttcagctattgataataaccaagtcaacatccatgcaaaaattaaagtccgcatggaa
gatgggaatatatataatactacagcaggacgtattcttgtttgggaaggtctgcccaaa
gggcttaaattcgaatacgttaattgtgttcttactaaaaaaaatattgctactcttgtt
ggaaatgcttatcgtgatgctggaatcaaagcaactgttattctctgtgaccgcctaaaa
gacattggatatgaatatgctacaagagcaggcatcacaattggtgtgaaagatctcatt
attcctgctaccaaaaaaacaatcattgatacagctacttctgaagttgacgatattgaa
cgtcaataccgtgatggtattatcacccgtacagaaaaatataataaagttgttgacgtt
tggactaaagctacacaagatatttcttcagaaatgaccaaagaaatttctacagaagtt
gttaaagatccaaagacagaaagaacagaagtcaaccaaagctttaatcctatttttatg
atgtccaactctggtgctcgaggaaaccaggatcaaatgcgacagttagcaggaatgcgt
gggttaatggctaaaccttcaggtgaaattattgaaacaccaatcacttctaacttccgt
gaaggattaacggtactccaatattttacatctacacatggtgcccgaaaaggtcttgca
gacactgctctaaaaactgctaactctggatatcttactcgtcgtcttgtagatgttgtc
caagatgttattgtttataaaaatgactgtgggactgtagatggtattgaagttaaacaa
gttcaagatggtggagaaatcaaacaaaaccttagtgaaagaattctaggccgagttctt
ctctatcctatctatcatcctgttactaatgaaatcatcttccctgaaaatactcttata
gacgaatatgttgttaaaaaacttgaagaaattggtattgcttctgtcactattagatct
gcattaacttgtcagtctgaacgtggggtatgtgcattatgttatggacgtgatcttgct
cgtggccatcttgtcaacataggtgaaactgttggtataattgcagctcaatctattggt
gaacctgggacacaacttaccatgcgtactttccatattggtggaactgcctcacgcgaa
attgaacgctctaattttgaagctcttcattctggaagaattgttcttactcgtgttaag
tcagttgaaaatcgtgatggcgtccatcttgtaataggtaaaagtggtcaactttctatc
gtagatgaacaaggacgagaaagagaaagatattctttacctaatggagctagactttat
gtaaaagaaggacaagaagtcacaaaaggtacttttcttgcagaatgggatccttttaac
gaaccttttgtctctgaagtaaatggatttatcaaatttaccgatcttattgatgggaaa
acataccaagaaaaacttgatgaagctactcatcaatcatccatgacaataattgaatac
agaactactagcttccgtccttcaatatcaatatgtgatgcagaaggccaaacaaaacaa
cgtatcacaagtacaacacctgcaatatatagtctccctgcaggagctattataatggtc
aaagatggtcaagaagtacaagctggggacattatagctcgtaaacctcgtgaaacttca
aaaacacgtgatattgttggcgggcttcctcgagttgctgaattgtttgaagtccgtaaa
ccaaaagatatggctgttgtttccgaaattgcaggtatagttacttatgcaggtgaatcc
aaaggaaaacgtaaacttattgttactcctgaaataggtgatcctaaagaatatcttatt
ccaaaaggtaaacacattaacgtttctgatggtgactttgttgaagcaggagatctctta
acagaaggacatcctgaacttcatgatatccttaaaacaagaggtgaaaagtatcttgct
gcatatcttgttgatgaaattcaagaagtttaccgctttcaaggtgtaggaattgacgat
aaacatattgaagtcattgttcgacaaatgttacgtaaaatcactgtaacaaatcctgga
ggaacaacgttccttgttggagaacaagtagataaaggtgactttaaagaagaaaaccaa
aaaattgtggaagaaggattagaacccgctacagcagaaccattggtattaggaattact
caagcctcactaacaacttcatcatttatttcagcagcttcattccaagaaacgacaaaa
gttcttacagaagcttctctaaaaggaaaaatggattacctgagaggactaaaagaaaac
gttattgttggtcgacttattcctgcagggacaggttatagggaatatatggagttagat
attgttgttcctgaacaaaaagaacgtccaaacaaatttcttgaagaacttgaagaacgt
cctgttttaatagagatagattcttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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