KEGG   Listeria ivanovii subsp. ivanovii PAM 55: LIV_1481
Entry
LIV_1481          CDS       T01623                                 
Name
(GenBank) Putative single-stranded-DNA-specific exonuclease (RecJ)
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
liv  Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03410  Base excision repair
liv03430  Mismatch repair
liv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:liv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LIV_1481
   03430 Mismatch repair
    LIV_1481
   03440 Homologous recombination
    LIV_1481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:liv03400]
    LIV_1481
DNA repair and recombination proteins [BR:liv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     LIV_1481
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     LIV_1481
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LIV_1481
SSDB
Motif
Pfam: ssDNA-exonuc_C RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: CBW85964
UniProt: G2Z9M4
Position
complement(1546714..1549065)
AA seq 783 aa
MIDSKYLWNIEEAEEEKATQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYQTYDP
FLFAEMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLQHLGANAEFYIPNRFT
EGYGPNIAAFDLAKNQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV
AVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPTELLDLVAVGTVADLVSLTDENRML
VQLGLRQLREGANIGLAILAKKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLL
TEDPEEALFLAEEIDDANKERKQMVVDTTKLAMEAIEAKNSLGKVLVVSGEGWNTGILGI
VASKLVSVYSRPAIVLGIDAATGIAKGSGRSIESFHLYQALDKHRELMTAFGGHPMAAGL
TLPAENLLELEAKLQEEASQLVEEDFRPALQIEERINLADASVAFIAQLEKLAPFGMDNP
KPIFLLEGMKLKGTKRIGADKTHLKTMLGTGGTDTTLDAIGFGVGDLVEKISPSADVDVV
GELSINEWNNIKKPQLRMMDVRIAHWQLFDVRSKTEWSRIRQEKADSRIYICFEERTAKT
LGEQNHFLVDEKADFKVDIQTEELVFADIPPNLKLIEEIVREVKPARIFVHFDAAEGNQI
PAIPDRKAFAELYSLIKKFQPFPIEKYTPRLMQKFGWNKEQIEFMSNVFFDLEFAKMESG
QIIVNQVVGKRNLDESLVYQQKVEEITTRKKLLYSNYSELHSWMKSMMETSIYPNAEELE
NGN
NT seq 2352 nt   +upstreamnt  +downstreamnt
gtgattgattcaaaatatttatggaatatcgaggaagccgaagaagagaaagcaactcaa
ttagcagaacaactgaaaatctcgcttccacttgcaaagctactttggaaaagaaagatt
acaacgcaaggacaattcgataaatttttccacccagaaaaatatcaaacttatgaccca
tttctatttgcggaaatggatcttgcggttgcgaggattaaacaagcaatcgaactaaat
gaacaaatccttgtgtacggagactatgatgcagatggtgttacgagtattgctgtgtta
atgaagacattgcagcatttgggagctaatgcagaattttatatcccaaatcgctttaca
gaaggttacggacctaatattgccgcttttgatttggcgaagaaccaaggcgttgattta
ataattaccgttgataatggtattgctgcgctagaagttatgacacatgccaaagaaatt
ggtttagatgttatcgtaacggaccatcatgaaccacgggaagttatgccagaagcagtc
gctgttattcatccgaagcatccaaaatctgcttatccatttgatgaactcgctggggtt
ggagttgcttataaattatctcatgcactacttggcgaggaaccaacagaattattagat
ttggttgcagtcgggacggttgctgatttagtgtcactaactgacgaaaatcgtatgctg
gtccaattaggtttgcgtcaactacgcgaaggggcaaatattggtttagctattttagca
aaaaaagctagtttgaagttggaagaagctacggaagaaacgattggatttggtcttgct
cctagacttaatgcagttggccgtcttggccctgcggatccagcagcagatctgctttta
acagaagatccagaagaagcactttttttagcagaagagattgatgacgctaataaagaa
cgcaaacaaatggttgttgatacgactaaacttgcgatggaagcaattgaagcaaagaac
agtctggggaaagtgttagttgttagtggagaaggatggaatacagggattctgggcatt
gtggcctcaaaactagttagtgtgtattctagaccggccattgtactaggtatagacgca
gcaacaggaatagctaaaggttcaggtcgtagcatagagtctttccatttgtatcaagca
cttgataaacatcgagaattaatgactgcatttggtggtcatcccatggctgctggtctt
actttgccagcagaaaatttgctggaattagaagctaagttacaagaggaagcgagccaa
cttgtagaagaagattttcgtccagccttgcaaatagaggaacgtattaatctagcagat
gcctcggtagcttttatcgctcaactagaaaaactagcaccgtttggaatggacaatcca
aagccaattttccttttagaaggaatgaagttaaaagggacgaaaagaattggcgccgac
aaaacacatctaaaaacaatgcttgggacaggtggaacggatacaacacttgatgccatt
ggctttggcgtaggcgatctagtcgagaaaatttctccttcagcagatgtagatgtcgtt
ggtgaattatctatcaatgaatggaacaatattaaaaagccacaacttagaatgatggat
gttcgtattgcacactggcaacttttcgatgtgcgaagtaaaacggagtggtcgcgaatt
cgtcaagaaaaagcggattcacgcatatatatttgttttgaagagcgaacagctaaaaca
ctcggagaacaaaaccattttttagtagatgagaaggcagatttcaaagtagatatccaa
acagaggagctcgtatttgcggatattccaccgaatctaaagctgattgaagaaattgtc
cgcgaagtaaaaccagcgcgtatctttgttcattttgatgcagcagaaggaaatcaaatt
ccagcaataccagatcgtaaggcatttgctgagctatatagcttaataaaaaaattccaa
ccatttccaattgaaaaatacacaccacgcttaatgcaaaagtttggttggaataaagaa
caaattgagtttatgtcaaacgtgttttttgatttagaatttgctaaaatggaaagtggt
cagattattgttaatcaagtagttggaaaacgtaatctggatgagtcactagtttatcaa
cagaaggtagaagaaattactactcgaaaaaaattgttatactccaactacagcgagctt
catagttggatgaagtcaatgatggaaacatcaatttacccgaatgcggaggaacttgaa
aatggaaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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