KEGG   Listeria ivanovii WSLC3009: AX25_09330
Entry
AX25_09330        CDS       T03045                                 
Name
(GenBank) DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
liw  Listeria ivanovii WSLC3009
Pathway
liw03030  DNA replication
liw03410  Base excision repair
liw03420  Nucleotide excision repair
liw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:liw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AX25_09330
   03410 Base excision repair
    AX25_09330
   03420 Nucleotide excision repair
    AX25_09330
   03430 Mismatch repair
    AX25_09330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:liw03032]
    AX25_09330
   03400 DNA repair and recombination proteins [BR:liw03400]
    AX25_09330
Enzymes [BR:liw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AX25_09330
DNA replication proteins [BR:liw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AX25_09330
DNA repair and recombination proteins [BR:liw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AX25_09330
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AX25_09330
   MMR (mismatch excision repair)
    DNA ligase
     AX25_09330
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AX25_09330
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AHI56272
Position
complement(1884023..1886038)
AA seq 671 aa
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWVTPESPSNR
VGGEVLEGFQKVAHDTPMLSLANAFNKEDLADFDRRIRDKVGEDIAYMCELKIDGLAVSL
QYDNGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSDGLDMLE
TLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMGTTAKSP
RWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERTGDEEPFHMPKNCPTCESELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFTHHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEQSKQNSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKIADKETLTS
INDIGEKMADSIVTYFANEEVHDLLDELKRANVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEQLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLI
EYLPDEGGLDK
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggctgataaaaaacggtatgaagagcttattaacatacttgatcagtacagctatgat
tattatgtaattgataacccaacagtagaagatgccgaatacgatcaaaaaatgcaagaa
ttacttcaaatagaagaggcgcatccggaatgggttacacctgaatctccgtccaatcga
gttggcggggaagtgttagaagggtttcaaaaagtagcacatgacacgccgatgttaagt
cttgcgaatgcatttaataaagaggacctagctgattttgatcgtcgtattcgagacaaa
gtaggtgaagatatcgcttatatgtgcgaactgaaaattgatggtcttgcagtatcactt
caatatgataatggtaaatataaacaaggtgcgacacgcggtgacggcacgattggcgaa
gatattaccgccaacttacggacgattcgttccattccaatgaaattacaaaaagattat
tccattgaagtacgtggcgaggctttcatgccaaaacgctctttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgctgttcgcaaatccgcgaaatgcagcggccggatca
ctgcgccaattagatacaaaaattgccgcatcaagaaatttagatatcttcctatatgcc
gtagccgattttggtgaaatgggtgttacaactcatagcgacggccttgatatgcttgaa
acacttggtttaaaagtgaacaaagagcgcagactttgtgctaatttggaggaagtttac
gcttatattgatgagtggactgaaaaaagagcgggcttagcgtatgatattgatggtatt
gttttgaaactaaatgatttagagcaacagcgtcaaatgggaacaaccgctaaatcacca
cgctggtctatcgcctataagtttccagcagaagaagtaccaaccaaattacttgatatt
gaactaaatattggtagaacgggtgtggtaactcccactgctgtgttagaaccagtacga
gtagcaggaacaacggttagccgggcttctcttcataacgaagacctcataaccgaaaaa
gatattcggattggcgataccgttttaataaaaaaagcaggggacatcattccagaagtt
attaaaagtattaccgaagaaagaactggtgatgaagaacctttccacatgccaaaaaac
tgtcccacttgtgagagcgaacttgttcgtttagaagaagaagtggcgctcagatgtatc
aatccgaaatgcccagcgcaaatcaaagaaggcttaattcactttgtttctcgaaatgca
atgaatattgatggactcggtgaaaaagtaataattcaactgtttacacaccatttaatt
aaagatgtagcagatttgtttttcctttcgaaagagaaactgttagaattagaaagaatg
ggagaaaagtcagtaaccaatttactcgcatcaattgaacaaagtaaacaaaactcacta
gaaaaattattatttggcttaggaattcgtcatgtcggcgctaaagcagccaaatcactt
gcgattcactttgaaaccatggataatttgaaaatagccgataaagaaacattaacaagt
attaatgatatcggcgaaaaaatggcagacagcatcgtcacctactttgcgaatgaagaa
gttcatgacttactagatgaattaaaaagggctaacgtgaatatgacttatacaggacca
aagctagaagatatgtccgaagaagaacttgtttttgcagggaaaacagtggttctaact
gggaaattagaacagttaacaagaaacgatgcaaaagccttaatcgagtcacttggcggg
aatgtttctgggagcgtcagtaaaaagacggatgttgttgtagctggcagtgatgctggt
tctaaactcgctaaagcagaagaactagcaattcctatttggtccgagaatgacttaata
gagtacttaccagacgaaggtggattagacaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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