KEGG   Lotus japonicus: Lj1g3v1720130.1
Entry
Lj1g3v1720130.1   CDS       T04348                                 
Symbol
Lj1g3v1720130.1
Name
(Kazusa) -
  KO
K10570  DNA excision repair protein ERCC-8
Organism
lja  Lotus japonicus
Pathway
lja03420  Nucleotide excision repair
lja04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    Lj1g3v1720130.1 (Lj1g3v1720130.1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Lj1g3v1720130.1 (Lj1g3v1720130.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lja04121]
    Lj1g3v1720130.1 (Lj1g3v1720130.1)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj1g3v1720130.1 (Lj1g3v1720130.1)
Ubiquitin system [BR:lja04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     Lj1g3v1720130.1 (Lj1g3v1720130.1)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      Lj1g3v1720130.1 (Lj1g3v1720130.1)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40
AA seq 400 aa
MWKQIRDRESGKLRPNHFTNRVSSNRVSHLQLSNHKDLISPHKGAINSLQIDLTEGRYLL
SAASDASVAVYDVQRPSEYEAGGAIAKHRCIFVIDKQHQLAHKYAVSSAIWYPIDTGLFV
TGSYDHHVNVWDTNTTQVVVNFKMPGKVYRTAMSTLSTSHMLIASATEDVQVRLCDIATG
AFTHTLSGHRDGVMSVEWSASSEWVLITGGLDGAIRFWDIRRAGCFQVLDQSRTQLGRRP
SILKHSMITKDSSTKNRAVQKKHANGSGSRQPPIGRVPSRGPMKQRLHPGMLSTQDRATA
HYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQTNKPIQLATTQDS
TPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgtggaagcaaatcagagacagagaatcaggcaaattgcgacctaaccatttcaccaat
cgcgtttcctccaatcgcgtttctcatctccaattatccaatcacaaagacctcatctcc
cctcacaaaggcgcaatcaactcccttcagattgatttgacagaaggaagatacttgttg
tctgctgcttccgatgcatctgtggcggtttacgacgttcaacgccctagcgagtatgaa
gccggtggtgccatagcgaagcacaggtgtatatttgttattgataaacagcatcaattg
gctcataagtatgcggtgtcttctgctatttggtatcccattgatactggcttgttcgtc
actggctcatatgatcatcatgttaatgtttgggacactaacaccacccaggtggtggtg
aatttcaaaatgcctggaaaggtttataggactgccatgtccactttgtcaacatctcac
atgcttattgcttctgcaactgaggatgttcaggttcgcctttgtgacattgctaccggg
gcgtttactcacactttgtctggtcatcgtgatggagtaatgtctgttgaatggtcggct
tcaagtgaatgggtcttaattactgggggattggacggtgcaatacgtttctgggatatc
aggcgtgctgggtgtttccaagttctagatcaatctcggactcagcttggaagacgtcca
tctatactcaaacactccatgataacgaaggattcaagcaccaaaaatcgtgctgtgcag
aagaaacatgctaatggaagtggtagcagacaaccgccaattggtagagttccatctagg
ggaccaatgaagcagagattacatccaggaatgctgtccactcaggatcgtgcaactgct
cattatggtgctgtgacagggttaaaagtaacagaggatggcatgtatctcttaagtgca
gggtctgattcaagattgaggttgtgggatgtggaatctggctgtgatacacttgtgaac
ttcgaaactgtccgcctgcaaacaaacaaacctattcaattagccacgactcaagactca
acccctgttttcgttccctgcatgagagctgtgaaagcatttgatatgtggtctgggaat
gcgcacacaatactacgtggccactatgaatgtgtgaactcgtgctggtttaatcaacaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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