KEGG   Lotus japonicus: Lj1g3v3218060.1
Entry
Lj1g3v3218060.1   CDS       T04348                                 
Symbol
Lj1g3v3218060.1
Name
(Kazusa) -
  KO
K12881  THO complex subunit 4
Organism
lja  Lotus japonicus
Pathway
lja03013  Nucleocytoplasmic transport
lja03015  mRNA surveillance pathway
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
   03015 mRNA surveillance pathway
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
   03041 Spliceosome [BR:lja03041]
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     Lj1g3v3218060.1 (Lj1g3v3218060.1)
    TREX complex
     Lj1g3v3218060.1 (Lj1g3v3218060.1)
Spliceosome [BR:lja03041]
 Complex C
  Other components
   EJC/TREX
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Lj1g3v3218060.1 (Lj1g3v3218060.1)
SSDB
Motif
Pfam: RRM_1
AA seq 122 aa
MDLEDDKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVV
FMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNHALVREQ
GI
NT seq 366 nt   +upstreamnt  +downstreamnt
atggatttggaagacgacaaggtgtcggagaataagggcacaaagctctacatttctaac
ttggactatggggtttccaatgcagatataaagctgctgttctccgaagagggtgagttg
aaaaggtacggcattcattatgacaagagtgggagatcaaaaggaacagcagaagtagtc
ttcatgaggcagtccgatgctttagcagccatcaagaaatacaacaatatgaggcttgat
ggaaagccactgcaaattgagcttgttggatcaagtttggttactcctgcccctgccgtt
gtgcctctttcgcaaaatagcttacagggaaggctaaaccatgctcttgtgagggaacaa
ggaatt

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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