KEGG   Lotus japonicus: Lj2g3v0039360.1
Entry
Lj2g3v0039360.1   CDS       T04348                                 
Symbol
Lj2g3v0039360.1
Name
(Kazusa) -
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
lja  Lotus japonicus
Pathway
lja03020  RNA polymerase
lja03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Lj2g3v0039360.1 (Lj2g3v0039360.1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Lj2g3v0039360.1 (Lj2g3v0039360.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    Lj2g3v0039360.1 (Lj2g3v0039360.1)
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj2g3v0039360.1 (Lj2g3v0039360.1)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj2g3v0039360.1 (Lj2g3v0039360.1)
Transcription machinery [BR:lja03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     Lj2g3v0039360.1 (Lj2g3v0039360.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Lj2g3v0039360.1 (Lj2g3v0039360.1)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Lj2g3v0039360.1 (Lj2g3v0039360.1)
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
AA seq 176 aa
MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI
NT seq 534 nt   +upstreamnt  +downstreamnt
atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt
aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt
cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt
gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt
aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa
gctggacctgttcaaatcttcgtctcaaaccatttgattccagatgatatggagttccag
tctggtgacatgccaaattacactacttcagatggatcagttaagattcagaaagatagt
gaagtgagactaaagataattgggactcgagtggatgctaccgaaattttctgcatagga
accataaaagatgatttcttgggtgtgatcaacgaccctgtagcaatctaaatg

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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