KEGG   Lotus japonicus: Lj2g3v1643230.1
Entry
Lj2g3v1643230.1   CDS       T04348                                 
Symbol
Lj2g3v1643230.1
Name
(Kazusa) -
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lj2g3v1643230.1 (Lj2g3v1643230.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj2g3v1643230.1 (Lj2g3v1643230.1)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj2g3v1643230.1 (Lj2g3v1643230.1)
Enzymes [BR:lja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Lj2g3v1643230.1 (Lj2g3v1643230.1)
Messenger RNA biogenesis [BR:lja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Lj2g3v1643230.1 (Lj2g3v1643230.1)
DNA repair and recombination proteins [BR:lja03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Lj2g3v1643230.1 (Lj2g3v1643230.1)
SSDB
Motif
Pfam: DEAD Helicase_C RQC HTH_40 RecQ_Zn_bind HRDC ResIII Helicase_Sgs1
AA seq 912 aa
MDAMSSVLKNYFGFSDFRPYQKDIIEKIIEKRDCVVVMATGSGKSLCYQVPPLVVKKTGI
VVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTISTS
FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRF
DIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTT
IKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNI
RKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCGDIKSEIQRRAIM
ESLRAAEHYCVLPTCRRKFLLEYFGENFPADRCGNCDNCLVAKKERDLSREVFLLMACIH
SCKGNWGLNIPIDILRGSRAKKIIDAQYDKLPLHGLGKTYPANWWKALGHQLICQGYLKE
TFIDIYRAISVSSKGEEFLASCRPDYQPPLILSLTTEMLGEEENGSTEDFKILATSESGG
FSEAEGQLLQMLLEERLKLARSVGTAPYALCGDQTIKKIALTRPSTKARLANIDGVNQHL
LTRYGDHFLGVIQKLSQGLNLSLDGEASMQTNEVRKVSPVNINKSRKLTPAKFEAWKMWH
EDGLSIEKIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWTRFCEMIGLTQEIMSEIQGA
ILKVGSEDKLKPIKNELPEDITYQHIKAYLTMRSCGGPQSGKDGEAANNASNGEAVNNAA
NLSEPHLETCYKERPLEADITGKSLKENFDLEIDEVVLSGPVNGSTVQKLPLACEGEFTA
KRQKVAEEVKSVKLKATESSVVEWLKNLDEGATLIDVLEHFNGSDEDSVVEVLNCLECDF
AIYKKGNMYRAM
NT seq 2742 nt   +upstreamnt  +downstreamnt
atggacgccatgtcctctgttctcaagaactactttggcttttcggattttcggccttac
cagaaagacattattgagaaaattattgagaaaagggattgtgtggtggtcatggccact
ggcagtgggaagtccttgtgctatcaggtacctccattggttgttaaaaagactgggatt
gttgtaagccctctcatatcattgatgcaagaccaggtaatggctttgaaggagcggggt
atcaaagctgagtatcttggaagtgctcagaaggatttcactgttcagactaaagctgag
catggtcaatttgacattcttttcatgactcctgagaaggcatgcacaatttcaaccagt
ttttggtccaatttgctaaaggcaggcattagtctttttgctgttgatgaagcacattgc
atatcagaatgggggcatgattttagggtggagtacaagaacttagacaaattacgcagt
gttttggtagaagttccttttgttggtctaactgccactgctactgaaaaggttcgattt
gacatcatcaaatctctgaagatgaataatccttatgttttagttggttcatttgatcgc
gcaaatcttttctatggtgtaaagccatttagccgtggacaatcttttattgatgagctt
gtgcgagaaatttcaaaagaagttgatagtggtacttcaactataatttactgcacaaca
atcaaggatgtagagcagatatccaagtcacttacggaagcaggtattaaggctggaatg
taccatggacaaatgaatggcaagtctcgagaggaatctcacagattatttgttagagat
gaagtgcaaatcatggtggctacaattgcttttggcatgggcatagataaacctaacata
agaaaagtgattcactatggctgccctaagagtatagaatcctactaccaggaaagtgga
cgatgtggtagagatggtataccttctgtttgttggctttactacacaagaggtgacttt
gcaaaaggcgaattctattgtggagatataaaatcagaaatccaaagaagagctattatg
gagtcattgcgggctgcggaacactattgtgtgctgccaacttgcagaagaaagttcctt
cttgaatactttggggaaaattttccggctgatagatgtggaaactgtgataactgctta
gtcgcaaagaaggagcgtgacctgtcgagagaagtatttcttctaatggcttgcattcat
tcatgcaagggcaattggggccttaatatccccattgacattctgcgtggttctcgagcc
aagaaaattattgatgctcagtatgacaagcttccacttcatggacttgggaaaacttac
ccagcaaattggtggaaagcacttggacatcaattgatttgccaaggttatttgaaggag
actttcattgacatatacagggctataagtgtcagttcaaaaggagaggaatttttggcc
tcgtgtagaccagactatcaacctcctttaattttgtcattgactactgaaatgcttgga
gaggaggaaaatggaagcacagaagatttcaaaattttagctacttcagaatcaggtggt
ttttcagaggctgagggtcagctcctccaaatgcttttagaagaaagattaaagcttgca
agaagtgttggaactgctccttatgctctatgtggtgatcaaacgatcaagaaaattgct
ttgacaagaccatctacaaaagcaaggctagcaaacattgatggtgtgaatcagcacctg
ctaaccagatatggagatcattttcttggagttattcagaaactgtcacaaggattaaac
ctatcattggatggcgaagcaagtatgcaaacaaatgaagtacgtaaagtatctccagta
aatatcaacaaatcaagaaaattgacaccggcaaagtttgaagcatggaaaatgtggcat
gaggatggtctttctattgagaagattgctaactttccaggtagatcagctcctataaaa
gaacaaaccgttgctgaatatctgctggaagctgcccaagaaggattgccttttgattgg
actagattctgtgagatgataggattgacacaagagatcatgtcagaaattcagggcgct
attttaaaggttggatctgaagataagctgaagcctataaagaatgaattgccagaagat
ataacttatcagcacattaaggcttatttgacaatgcgaagctgtggaggtccccagtct
gggaaagatggtgaagctgcaaataatgcatcaaatggtgaagctgtaaataatgcagca
aatttgtcagagcctcatttagaaacatgctacaaggaaaggcctcttgaagctgacatc
actggcaaaagtttgaaggaaaattttgaccttgaaattgatgaagttgtactttctgga
cctgtcaatggttccacagtacagaagcttccattagcctgtgagggggaattcacagcc
aaacgacaaaaagtagcagaggaagtgaagtcagttaaattgaaggctacagagagttct
gttgtagagtggctgaagaaccttgatgaaggggctactttgattgatgttttggagcac
ttcaatggatccgatgaagattctgtggttgaagtgctaaattgccttgagtgtgacttt
gcaatatataagaaaggtaacatgtatagggctatgtaaaaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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