KEGG   Lotus japonicus: Lj5g3v0746910.1
Entry
Lj5g3v0746910.1   CDS       T04348                                 
Symbol
Lj5g3v0746910.1
Name
(Kazusa) -
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lj5g3v0746910.1 (Lj5g3v0746910.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj5g3v0746910.1 (Lj5g3v0746910.1)
Enzymes [BR:lja01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     Lj5g3v0746910.1 (Lj5g3v0746910.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Lj5g3v0746910.1 (Lj5g3v0746910.1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Lj5g3v0746910.1 (Lj5g3v0746910.1)
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2
AA seq 601 aa
MLTVLRVHLPSDIPIVGCELTPYVLIRRPDTNINNDDVPETAPVGGHFLRYKWYRVHSDK
KVAVCSIHPSEQATLQCLACTKANIPVSKSYHCTTKCFSNAWQHHRVLHERAANAANENG
NEEEEVFGRFNSSGSGVINSNLSASALSASLTNGFAAPLYPAAVPKRLGGESWHEVGRSK
TYIPTADDIGHVLKFECAVVDAETKLPVGHVNTILTSHVIHAPSPIPRRMIRVDGTGHLD
ANGRQSSSGTFTILSYNILSEACASNALYNYCPPWALSWPYRRQSLLREIVGYRADIICL
QEVQSDHYDEYFAPELDKHGYNGLFKRKTTEVSNGNTNTIDGCATFFRRDRFSHVKKYEV
EFNKAAQSLTDAMVPTAQKKIALSRLVKDNVALIVVLEAKANNQGVDNPGKKQLFCVANT
HVNVQHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPS
HPDLAVDPLNILHPHSKLVHQLPLVSAYSSFARTVGHGFEQHKRRLDGGTNEPLFTNVTR
DFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWPSDHIALLAEFRCTRNKSR
R
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgctgaccgtgctgcgggtgcacctgccttccgatattcccattgttggctgcgagctc
acgccttacgttctcattcgccgccccgataccaacattaacaacgatgatgttcctgaa
accgctcccgttggtggccatttcttgcgatacaagtggtatcgtgttcatagtgataaa
aaggtcgctgtctgtagcatacatccatctgagcaggccactctgcagtgcttagcttgt
actaaggccaacatacctgtttccaaaagttaccattgcaccaccaaatgtttctcaaat
gcatggcagcatcatcgtgtcttacatgaacgtgcagcaaatgctgctaatgaaaatgga
aatgaagaggaggaagtatttgggcgctttaatagttctggttcaggggtaatcaattcc
aacttgtctgcctctgctttaagtgctagcttgacaaatgggtttgcagcacctctgtat
ccagcagctgtcccaaaaagacttggtggtgaaagttggcatgaagtcggacgatccaag
acttatatcccaactgctgatgacattggtcatgttcttaagtttgaatgtgctgtagtt
gatgcagagacaaagttgcctgttggacatgtgaacactatactaacttcgcatgtcatt
catgctccctctcccattccacggcgaatgatacgtgttgatggcacggggcatttagat
gcaaatgggcgtcagtcatcttcaggaacttttactattctgtcatacaatatattgtct
gaagcctgtgcctcaaatgctctgtataattattgccctccatgggctctttcttggcca
tatcggaggcaaagtttgttacgagaaattgttggttaccgtgcagatattatctgtctt
caggaggttcaaagcgaccattatgatgagtattttgctcctgaactggacaaacatggc
tacaatggtcttttcaagagaaaaacaactgaggtatctaatggaaacaccaacacaatt
gatggttgtgcgacatttttccgtagagacagattctcacatgtgaaaaaatatgaggtt
gaatttaataaggctgctcagtctttaacagatgctatggttccaactgctcagaagaaa
attgccttgagtcggctggttaaggacaatgttgcactaatagtggttctagaagcaaaa
gctaacaatcagggagttgataatcctgggaaaaaacagcttttttgtgtggcaaataca
catgtaaacgtacaacacgatttaaaagatgtcaaactctggcaggtgcacactctcttg
aaaggattggagaaaatagctgcaagcgcagatatccccatgttggtttgtggagatttt
aattcagttccaggaagtgctcctcatgcacttcttgcaatggggaaggtagatccgtca
catcctgatttagcagttgacccacttaatattttacaccctcacagcaagttggttcat
cagttaccactggtcagtgcatactcatcttttgcaagaacggttggccatggatttgag
cagcataaaaggagactggatggtggaacaaatgaacctttattcacaaatgtcactaga
gattttattggcactctagattacatattttacacagcggattcattggttgtggagtca
ttgttagagttattggatgaggagagtttgaggaaggacactgcacttccctcacccgaa
tggccctcagatcatatagctcttttagctgagtttcgctgcactaggaataaatctaga
cgttgacac

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