KEGG   Lotus japonicus: Lj5g3v2169560.1
Entry
Lj5g3v2169560.1   CDS       T04348                                 
Symbol
Lj5g3v2169560.1
Name
(Kazusa) -
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lj5g3v2169560.1 (Lj5g3v2169560.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj5g3v2169560.1 (Lj5g3v2169560.1)
Enzymes [BR:lja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Lj5g3v2169560.1 (Lj5g3v2169560.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     Lj5g3v2169560.1 (Lj5g3v2169560.1)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N nSTAND3 AAA_22 AAA_19 AAA_11 ATPase ResIII T2SSE AAA_23
AA seq 1154 aa
MLPTPQPTSFPNLSSHLPFLPMKDRPYGAVYVPPHHRLRSVVTSANHHSAAAAPVSPKLT
QNPTPLKTPFLEQAPNNTNSRFVSAYDDVVSDDCFDREFQIPLPSSLPSDFPNDNIAEWK
RKLSMLLNDKSKQEVISREKKDRHDFEQIAVLATEMGLYSHKYTKVVVFSKVPLPNYRYD
LDDRRPLREVSMPITLFRQVDAHFEEYLRQKSRVNKSFSDLSLARSSSNGSVGTDEGLFE
QPVLLASSKAVAEKVLLRRSLQMRNQQHAWQESPEGRRILEFRSSLPAYKEKEAILSILS
RNQVVIISGETGCGKTTQIPQFILESEIEAVRGAACNIICTQPRRISAMSVSERVASERG
EKLGESVGYKVRLEGVKGRDTHILFCTTGILLRRLLADRNLEGVTHVIVDEIHERGMNED
FLLIVLRDLLLHRPELKLILMSATLDAELFSSYFNGAPIMNIPGFTYPVRTYFLENILEM
TGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASTVEDAIRAADFKDYSPQTQESLSC
WNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLRNNVLGDPNRVLLLA
CHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNT
PCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQI
KSLRLGSISEFLSRALQSPEILAVQNAVEYLEIIGALDESENLTILGRYLAMLPMEPKLG
KMLILGAIFSCLDPILTVVAGLSVRDPFLAPMDKKDLADAAKSQFSGAYSDHLALLSAYE
GWKDADIDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDIGLVDSNTASYNAWSYDVN
LIRAVICFGLYPGICSIVHNEKSFSLKTMEDGQVLLYSNSVNARETTIPSPWLVFNEKIK
VNSVFLRDSTAVSDSVVLLFGGNLSKGDADNHLKMLGGYLEFFMEPDVADMYLSIRRELD
DFIQSKLLFPRMGMHLYHELLSAVRLLISNDECEGRFVFGRPVLKTLKKSVMVSRPALFS
RIESGPGGENSKSQLQTLLARAGYAKPFYKTEQLMNSQFQATVEFNGMQIIGLPCNNKKS
AEKAAAAEALPRRS
NT seq 3468 nt   +upstreamnt  +downstreamnt
atgctccccactccgcaacccacttccttcccaaacctctcttctcacctcccctttctc
cccatgaaggaccgcccctatggcgccgtttacgttccgccgcaccaccgcctccgctcc
gtcgtcacctccgccaaccaccactccgccgccgccgctcccgtttcccctaagctcaca
caaaaccctaccccccttaaaaccccgtttctcgagcaagctcctaacaacacgaactcg
cgcttcgtttctgcttacgacgacgtcgtttccgatgattgtttcgatcgtgaatttcag
attccactcccttcatcactaccgagtgatttccccaatgataacattgctgagtggaag
aggaaactaagcatgctcttaaatgacaagagtaagcaggaggtgatttcgcgggagaaa
aaggataggcatgatttcgagcaaatagcggttttggcgaccgaaatgggattgtatagc
cataagtacacgaaggttgttgtgttcagtaaggtgccacttcccaattatagatatgat
ttggacgatcgtcgtcccttgagggaggtgagcatgcctatcaccttgtttaggcaagtt
gatgcacattttgaggaatatcttagacagaagtccagggtgaacaaaagcttttcagat
ttgtcacttgcaagatcaagcagtaatggcagtgttggtacagacgaggggctttttgag
caacctgtgctgcttgcatccagtaaggctgttgcagagaaagttctcttgcggagaagc
ttacagatgcgcaatcagcagcatgcttggcaggaatctcctgaaggaagaagaattcta
gaatttcgtagcagcctccctgcttataaagagaaagaagcaatattatccatcttatca
aggaatcaggtagttatcatttctggtgaaacaggttgtggcaagacaacacaaattcca
caatttattttagaatctgagatagaagcagttcgtggagccgcttgcaatattatatgc
acacagccaagacgcatttctgccatgtctgtatctgagagggttgcctcggaaagaggg
gagaaattgggtgaatctgttggatataaagttcgactggagggtgtgaaagggagagat
acccatattctcttttgcaccacaggtatcttactaagaagattactagctgatagaaac
ttagagggggtaactcatgttattgtggatgaaattcatgaacgtgggatgaatgaagat
tttctgcttattgtccttagagatctccttctgcatcgacctgaattgaaactaattttg
atgagtgctaccctagatgcagagctcttctcttcgtactttaatggggctccaattatg
aatattccgggctttacataccctgttagaacttattttttggagaacattctcgaaatg
acgggctatagattgactccttataatcaaattgatgattatggtcaagaaaggatgtgg
aaaatgaacaaacaggctccaagaaagaggaaaagccaaattgcttccactgtagaggat
gcaattagagctgctgatttcaaagattacagcccacagacacaggaatctttgtcatgt
tggaatccagactgtataggttttagtctcattgaatatatcttatgcaatatttgtgaa
aatgaaaggcctggtgctgttttggttttcatgactggatgggatgatataagctctctg
aaagagaagctcctgagaaataatgtattgggagatccaaatcgtgttttgttgcttgca
tgtcatggctcaatggctagttctgagcagaggttaatattcgaagagcctgaagatgga
gttagaaaaatagtgctcgcaacaaatattgctgaaacgagtatcacaatcaatgatgtt
gtttttgttctagactgcggaaaggcaaaagaaacatcatatgatgcactgaataacacg
ccttgtttgcttcctacatggatctctaaggtttctgctcaacaaagaagaggaagagct
ggtcgcgttcaaccgggagagtgttaccatctctatcctagatgcgtatatgatgctttt
gcagagtatcaattgccagaaattttgagaacaccactgcaatctctctgtttacaaatc
aaaagtttaagacttggaagtatatctgagttcttgtctagggctctgcagtctcctgag
atccttgcggtacaaaatgcagttgaatatttagaaataattggtgctttggatgagagt
gagaatctgactattctagggcgctatctagctatgctgcctatggaacccaaacttggc
aagatgctcatattaggtgctatcttcagttgcctggatcccatattaactgttgttgct
ggtcttagtgttagagatcctttcctagcaccgatggataaaaaagatcttgcagatgca
gcaaaatctcaattttccggtgcatacagtgaccacctagcacttctaagtgcttatgag
ggttggaaagatgctgatatagacctgggtggatatgaatactgctggaaaaactttctt
tcattgcaatcaatgaaagctattgatgctcttcgcagggagtttatatgcctgctcaag
gatattggactagttgatagcaacacagccagctacaatgcgtggagctatgatgtgaat
cttatccgggcagttatttgctttggtctatatcctggaatttgttccattgtgcataat
gagaaatcattctcgttgaaaacaatggaggatggtcaagtgctcttatactcgaactcg
gtgaatgctcgggaaactacaattccaagtccatggctagtttttaatgagaagataaaa
gtgaactcagtttttctccgtgactcaacagctgtgtccgactcagtggtgcttctcttt
gggggaaacttgtcaaaaggagatgccgataatcacttaaaaatgttaggaggatatctg
gagtttttcatggaacctgatgttgctgacatgtacctgagtataaggagagaacttgat
gacttcattcagagcaaactactttttcccagaatgggtatgcacttgtatcatgagctc
ctatcagcggtacggttgttgatttccaatgacgagtgtgaaggaagatttgtttttggt
cgcccggttcttaaaacattaaagaaatctgttatggtctcacgtccagcattgttttca
aggattgagagcggacctgggggtgaaaattccaaaagtcagctccaaaccttgcttgca
agagcaggatatgctaaacccttctacaagactgaacagttaatgaacagccagtttcag
gctactgtcgagttcaatggaatgcagataataggcctaccttgtaataataagaagagt
gcagaaaaagccgccgcagctgaggcgctgccccgccgcagctgaggc

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (21)   

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