KEGG   Lotus japonicus: Lj5g3v2169560.2
Entry
Lj5g3v2169560.2   CDS       T04348                                 
Symbol
Lj5g3v2169560.2
Name
(Kazusa) -
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lj5g3v2169560.2 (Lj5g3v2169560.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj5g3v2169560.2 (Lj5g3v2169560.2)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     Lj5g3v2169560.2 (Lj5g3v2169560.2)
SSDB
Motif
Pfam: DEAD Helicase_C nSTAND3 AAA_22 AAA_11 AAA_19 ResIII ATPase T2SSE ABC_tran ATPase_2 TsaE NACHT AAA_7 Myosin_head AAA_23
AA seq 691 aa
MLPTPQPTSFPNLSSHLPFLPMKDRPYGAVYVPPHHRLRSVVTSANHHSAAAAPVSPKLT
QNPTPLKTPFLEQAPNNTNSRFVSAYDDVVSDDCFDREFQIPLPSSLPSDFPNDNIAEWK
RKLSMLLNDKSKQEVISREKKDRHDFEQIAVLATEMGLYSHKYTKVVVFSKVPLPNYRYD
LDDRRPLREVSMPITLFRQVDAHFEEYLRQKSRVNKSFSDLSLARSSSNGSVGTDEGLFE
QPVLLASSKAVAEKVLLRRSLQMRNQQHAWQESPEGRRILEFRSSLPAYKEKEAILSILS
RNQVVIISGETGCGKTTQIPQFILESEIEAVRGAACNIICTQPRRISAMSVSERVASERG
EKLGESVGYKVRLEGVKGRDTHILFCTTGILLRRLLADRNLEGVTHVIVDEIHERGMNED
FLLIVLRDLLLHRPELKLILMSATLDAELFSSYFNGAPIMNIPGFTYPVRTYFLENILEM
TGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASTVEDAIRAADFKDYSPQTQESLSC
WNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLRNNVLGDPNRVLLLA
CHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNT
PCLLPTWISKVSAQQRKSWSRSTGRVLPSLS
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgctccccactccgcaacccacttccttcccaaacctctcttctcacctcccctttctc
cccatgaaggaccgcccctatggcgccgtttacgttccgccgcaccaccgcctccgctcc
gtcgtcacctccgccaaccaccactccgccgccgccgctcccgtttcccctaagctcaca
caaaaccctaccccccttaaaaccccgtttctcgagcaagctcctaacaacacgaactcg
cgcttcgtttctgcttacgacgacgtcgtttccgatgattgtttcgatcgtgaatttcag
attccactcccttcatcactaccgagtgatttccccaatgataacattgctgagtggaag
aggaaactaagcatgctcttaaatgacaagagtaagcaggaggtgatttcgcgggagaaa
aaggataggcatgatttcgagcaaatagcggttttggcgaccgaaatgggattgtatagc
cataagtacacgaaggttgttgtgttcagtaaggtgccacttcccaattatagatatgat
ttggacgatcgtcgtcccttgagggaggtgagcatgcctatcaccttgtttaggcaagtt
gatgcacattttgaggaatatcttagacagaagtccagggtgaacaaaagcttttcagat
ttgtcacttgcaagatcaagcagtaatggcagtgttggtacagacgaggggctttttgag
caacctgtgctgcttgcatccagtaaggctgttgcagagaaagttctcttgcggagaagc
ttacagatgcgcaatcagcagcatgcttggcaggaatctcctgaaggaagaagaattcta
gaatttcgtagcagcctccctgcttataaagagaaagaagcaatattatccatcttatca
aggaatcaggtagttatcatttctggtgaaacaggttgtggcaagacaacacaaattcca
caatttattttagaatctgagatagaagcagttcgtggagccgcttgcaatattatatgc
acacagccaagacgcatttctgccatgtctgtatctgagagggttgcctcggaaagaggg
gagaaattgggtgaatctgttggatataaagttcgactggagggtgtgaaagggagagat
acccatattctcttttgcaccacaggtatcttactaagaagattactagctgatagaaac
ttagagggggtaactcatgttattgtggatgaaattcatgaacgtgggatgaatgaagat
tttctgcttattgtccttagagatctccttctgcatcgacctgaattgaaactaattttg
atgagtgctaccctagatgcagagctcttctcttcgtactttaatggggctccaattatg
aatattccgggctttacataccctgttagaacttattttttggagaacattctcgaaatg
acgggctatagattgactccttataatcaaattgatgattatggtcaagaaaggatgtgg
aaaatgaacaaacaggctccaagaaagaggaaaagccaaattgcttccactgtagaggat
gcaattagagctgctgatttcaaagattacagcccacagacacaggaatctttgtcatgt
tggaatccagactgtataggttttagtctcattgaatatatcttatgcaatatttgtgaa
aatgaaaggcctggtgctgttttggttttcatgactggatgggatgatataagctctctg
aaagagaagctcctgagaaataatgtattgggagatccaaatcgtgttttgttgcttgca
tgtcatggctcaatggctagttctgagcagaggttaatattcgaagagcctgaagatgga
gttagaaaaatagtgctcgcaacaaatattgctgaaacgagtatcacaatcaatgatgtt
gtttttgttctagactgcggaaaggcaaaagaaacatcatatgatgcactgaataacacg
ccttgtttgcttcctacatggatctctaaggtttctgctcaacaaaggaagagctggtcg
cgttcaaccgggagagtgttaccatctctatcctagatg

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (16)   
   Pfam (16)   
All databases (23)   

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