KEGG T04348: Lj6g3v0818980.1

Lotus japonicus: Lj6g3v0818980.1

Entry

Lj6g3v0818980.1   CDS       T04348

Symbol

Lj6g3v0818980.1

Name

(Kazusa) -

K03131

transcription initiation factor TFIID subunit 6

Organism

lja Lotus japonicus

Pathway

lja03022

Basal transcription factors

Brite

KEGG Orthology (KO) [BR:lja00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Lj6g3v0818980.1 (Lj6g3v0818980.1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    Lj6g3v0818980.1 (Lj6g3v0818980.1)
   03036 Chromosome and associated proteins [BR:lja03036]
    Lj6g3v0818980.1 (Lj6g3v0818980.1)
Transcription machinery [BR:lja03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
   Coactivators
    SAGA/TFTC/STAGA complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
Chromosome and associated proteins [BR:lja03036]
Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
    STAGA complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
    TFTC complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
    SAGA complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)
    SLIK complex
     Lj6g3v0818980.1 (Lj6g3v0818980.1)

SSDB

Motif

Pfam:

TAF6_C TAF TFIID-31kDa CBFD_NFYB_HMF Histone Forkhead_N

AA seq 544 aa
MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSRRTFLTSDD
VDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVDIKDLLEAPLPKAPLDTSI
TSHWLAIEGVQPAIPENAPVEASSEMRKSEYKEDGLPVDVKLPVKHVITRELQLYYEKIT
GLSLNKPGSIPFRRALVSLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLVRSL
LHNPHIHTELYIHQLMPPILTCVVAKRIGNRLSDDHWELRNFSANLVASICKRFGHVYHN
LQPRVTKTFLHSFLDPTKALTQHYGAIIGIAALGSRMVRLLILPNLEPYLHLIEPEMQLE
KQKNEIKRHEAWQVYGALLCAVGQCMHEKAKIFSSLLSPPTRVTSRGNGKALISMPINVG
KRKASTDNLMQQQQPPLKKIATDGPGGVIAMNSMSVDNMQGSTGGYSTMMGVSNVGMSSM
GRQLSNDHHMPGREVAGQQSKASAILAQAWKDDIDAGQLLSSVVELFGERVLSFIPKPEA
CIFL

NT seq 1635 nt +upstreamnt +downstreamnt
atgagttcggtgccaaaggagacaatcgaagtgatcgcacagagcattggcatcaccaat
ttgtcccccgatgttgctctcgctctcgctcccgatctcgagtatcgtattcgcgaaatc
atgcaggagtcgataaaatgtatgcgccactcgaggagaactttccttacttcagatgat
gtggatagtgcacttgcattgagaaatttagagccgatatatggtttcacctcaaatgat
cctctgcggttcaaaagagctgctgggcacaaggatttgttctacattgatgacaaagat
gtggatattaaagatctgcttgaagcacctttaccaaaagcaccccttgatacatcaatt
accagtcactggttggctattgaaggtgtgcaacctgcgattcccgaaaatgctccagtt
gaagcttcgtctgagatgagaaaatctgaatacaaggaagacgggcttcctgttgatgtt
aaattacctgttaaacatgtaataacaagggagcttcagctttactatgaaaaaattact
gggctgagtttaaataagcctggttctattccttttagaagagcattggttagcttggca
actgactccggacttcatcccttagttccttatctcacatgctttgttgcagatgaggtg
gcacgaaatctaaataatttaaatattttatttgccttgatgcgccttgtgcggagcctt
ttgcataatcctcacatacacacagaactttatatacatcagttgatgccacctatcctt
acttgcgtcgttgcgaaaaggataggaaacagactatctgatgatcactgggagcttagg
aacttcagtgctaatcttgttgcttcaatatgcaaaagatttgggcatgtttatcacaat
cttcagccgcgtgtgacgaagacatttcttcattctttcttggaccctacaaaagctcta
actcaacactatggtgcaattataggaatagcagctcttggatcaagaatggtgcgcttg
cttatacttccgaatctcgagccgtatttgcatctcattgagccagaaatgcaacttgag
aagcaaaaaaatgaaataaaaaggcatgaagcgtggcaagtttatggggccttgttgtgt
gcagtaggtcaatgtatgcatgaaaaggccaaaatattcagcagtttgctctcacctcca
acccgtgtcacttcaagaggcaatggaaaagccttgatttcaatgccaattaatgtaggt
aaacgtaaagccagcactgacaatctaatgcagcagcagcaacctccactgaagaaaatt
gcaacagatggtcctgggggtgtaatagcaatgaactccatgtcagtggacaacatgcaa
ggttcaacaggtggatattccaccatgatgggggtttccaatgttggcatgtcatcaatg
ggtcgtcaattatccaatgaccatcacatgccaggaagagaggttgcgggtcaacaatcg
aaagcatctgccattcttgctcaagcttggaaggatgacatcgatgcaggacagttgctg
tcatcagtggttgaattatttggcgaaagagtgttgtcatttattccaaaacctgaagca
tgtatatttttgtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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