KEGG   Lactobacillus johnsonii NCC 533: LJ_0877
Entry
LJ_0877           CDS       T00158                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ljo  Lactobacillus johnsonii NCC 533
Pathway
ljo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ljo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LJ_0877
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ljo03019]
    LJ_0877
   03016 Transfer RNA biogenesis [BR:ljo03016]
    LJ_0877
Enzymes [BR:ljo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LJ_0877
Messenger RNA biogenesis [BR:ljo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LJ_0877
Transfer RNA biogenesis [BR:ljo03016]
 Prokaryotic type
  tRNA degradation factors
   LJ_0877
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 RRM_1 RE_Bsp6I
Other DBs
NCBI-ProteinID: AAS08698
UniProt: Q74K76
Position
782107..784449
AA seq 780 aa
MTQNERVLADVYETFRHNPQEQYDVDQLENDLSRSQRLNFPDLVKALTFLEHSKKIVTDG
QGKYQLNQLNTVAEGTFKANDKGFGFVRFDDESMEDAFIDKHNTKFAIDGDRVKVKIIAG
ANPWNGKGPEGKIEEITERGVETLVGEFHPYSDEVVKSSGFYGYVVSENRKLKKYKINIT
DNGVKPQMGDMVKISITKYPDEDQPDEMQGVALLTIGNKNDPGVDIMSIVVDNDIRTDWP
EEAMDQANNIPDHVTEEEKSKRVDITDQPAVTIDGDDSKDFDDAVVVWKLPNGNYHLGVH
IADVSHYVKEGTPLDKEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDME
ITPEGKRVGYRIYPSVMKSHGRLTYNNVNKVLDPNNHEKLEQKYADAASMLHEMADLHNI
LYKKRHQRGAIDFEEPEAKIVVDDKGKPTDIVLHERGTAEKMIESFMLMANETVAEDYYK
KHTPFLYRVHETPDQEKMQSFFEFVSAFGLNVKADPNDVKPKDLQKIVAKTEGTPEEAVV
QMMMLRSLKQAHYSPEPLGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHEYANENMDQDIQ
KHFKAQLPDVAEQTSTQERKSIDTERSVNDLKMTEFMADKVGQTFDAIVSSVTSFGMFIQ
LPNTVEGLIHISNLNDDYYNFDEKSLTLTGRNSHKQFKIGMPIKVKLIRADVEQHQLDFE
IYDPNAPKRPQRSNNRGKRSFDKGRKNGGNKRNNNTSHVNNGHNFKIRHRKTTAVKSNKK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgacacagaatgaacgagttttagctgatgtttatgaaacatttagacataatcctcaa
gaacaatatgatgtggatcaacttgaaaatgatcttagtcgtagccaaagattgaatttt
cctgatttggttaaagctttaacttttttagagcatagtaaaaagattgtaactgatggt
cagggaaagtaccagttgaatcaattaaacactgttgctgaaggtacctttaaggcaaat
gataaaggatttggttttgtcagatttgatgatgaaagcatggaagatgcctttattgat
aaacataatactaaatttgctattgatggggaccgcgttaaggtaaaaattattgctggt
gctaatccatggaatggcaaaggtccagaaggtaaaattgaagaaattactgaacgtggt
gtagaaactttagttggagaatttcatccatactctgatgaagtagtgaaatcaagtgga
ttttacggttatgttgttagtgaaaatagaaaattaaagaaatataaaattaatatcact
gataatggtgttaagccacaaatgggtgatatggttaaaatttctattactaaatatcct
gatgaagatcaaccagatgaaatgcagggtgtagcacttctcacaatcggtaataagaat
gatcctggtgttgatatcatgtcaattgttgttgataatgatattcggactgattggcct
gaagaagcaatggatcaagcaaataacattcctgatcatgtaactgaagaagaaaaaagt
aaacgggttgatattaccgatcaaccagctgtaacaattgacggtgacgattctaaagac
tttgatgatgcagtcgtagtttggaaactccctaatggtaactatcacttaggagtacat
atagctgatgtatctcattatgtaaaagaaggcacaccgctagataaagaagcttttgct
cgtggtaacagtacatatttagttgatcgtgttatcccaatgcttccatttagattgtca
aatggtatttgctctcttaatgaaggtgtagaacgtttagttctatcatgtgatatggaa
attactccagaaggtaaacgtgttggatatagaatttatccatcagttatgaagtcacat
ggacgtttaacttacaataatgttaataaagttcttgatccaaataatcatgaaaagtta
gagcaaaagtatgcagatgcagcctcaatgcttcatgaaatggccgatttacataatatt
ttgtataaaaaacgtcaccaacgtggggctattgattttgaagaaccagaagcaaaaatt
gtagttgatgataagggtaagccaacagatattgttcttcatgaacgtggaactgctgaa
aagatgattgaatcctttatgttgatggcaaatgaaactgttgccgaagactactataag
aaacatacacctttcctttatcgtgtacatgaaactccagatcaagaaaaaatgcaatca
ttctttgagtttgtaagtgcatttggactaaacgtaaaggctgatccaaatgatgtaaag
ccaaaagatttgcaaaagattgtagctaaaaccgagggtacacctgaagaagctgttgtt
caaatgatgatgcttcgtagcttaaagcaagcacattattctcctgaaccactgggtcac
tttggtttagccgctaagtactatactcactttacttccccaattcgtcgctattctgat
ttaatggtccaccgtatgattcatgaatatgcaaatgaaaatatggatcaagatattcaa
aagcactttaaggctcaacttccagatgttgctgaacaaacttcaacacaagaaagaaaa
tcaattgatactgaacgaagtgtaaacgatctcaagatgactgagtttatggctgataaa
gttggtcaaacatttgatgcaatagtttcttcagtaacaagttttggaatgtttattcaa
ttgccaaatactgttgaaggtttaattcatatttctaatttaaacgatgactactataat
tttgatgaaaaatcactaactttaactggacgtaattcacataagcagtttaagattggg
atgccaataaaagttaagttgattagagctgatgtggaacaacatcaattagactttgaa
atttatgatccgaatgccccaaagcgtcctcaaagaagtaataatcgtggaaaacgtagc
tttgataaaggacgtaaaaatggtggaaacaagagaaataacaatacttctcacgtaaac
aatggccataattttaagattcgtcatcgcaaaacaacagctgtcaagtccaataaaaaa
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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