KEGG   Lactobacillus johnsonii NCC 533: LJ_1492
Entry
LJ_1492           CDS       T00158                                 
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
ljo  Lactobacillus johnsonii NCC 533
Pathway
ljo03030  DNA replication
ljo03430  Mismatch repair
ljo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ljo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LJ_1492
   03430 Mismatch repair
    LJ_1492
   03440 Homologous recombination
    LJ_1492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ljo03032]
    LJ_1492
   03400 DNA repair and recombination proteins [BR:ljo03400]
    LJ_1492
Enzymes [BR:ljo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LJ_1492
DNA replication proteins [BR:ljo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LJ_1492
DNA repair and recombination proteins [BR:ljo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LJ_1492
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_a_NII DNA_pol3_finger DNA_pol3_a_NI HHH_6 RNase_H_2 HHH_3 Auto_anti-p27 DEDDh_C T2SSK zf-ribbon_3 Zn-ribbon_8 YhfH
Other DBs
NCBI-ProteinID: AAS09260
UniProt: Q74IS3
Position
complement(1360658..1364956)
AA seq 1432 aa
MTKKNELFKKLLDQIKFPDKFEDNDIVQNGEIENVDVYANERKWKIHVFFDTPLDFETYR
SLNELIHETFEPFVNVELLVQTRDGSSKKLPAYWTYAIQNSTNLKPAVREFLQGQAPYLE
KEKWLIPTQNQVVNGLLSEQVLAELNKEFRRYGFFNIKFTTKVDETNIDENLRSLEQEQA
QHESAMQEFYEKQPAEPKKKMPVKSTRMGNKKVDKKAKFIQIKDLEDGSGNVAIEGHIFN
TDIHELKSGSVIFTGEITDYTDSISFKKFVSDKDQIDYLKGIKPGVWARMQGYAADDQYQ
HDVVFNIRNLELIEHKGREEKYEGEKKRVELHLHTNMSQLDATSTASDFIKTAKKFGQKA
IAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHALLVLNPTEMDYRNREYVIFDV
ETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDEMVGAADDE
KDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLHPEQTR
HTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNERFHEADLGKMNDYAKYGQVY
KRAKPSHMSVLALNQEGLKNMYKLVSLASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQG
DVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKE
LNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNLPDLHFYSTQEMLDAFSFLGED
VAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVE
DRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLA
PHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDGQDIPFATFLGFHGDKVPDI
DLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYGYVKHYEDENELHLRKAELD
RLAAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHDNI
LKFDILGHDDPTMIRMLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTSEQIQSKTGTLG
VPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCRD
NIMMDLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDWYIPSCLKIKYMFPK
AHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGM
DVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILAPFNAVPGLGDN
AAKQIVAARAEQKFLSKEDLATRGKVSQTIMEYFENNGVLEGMPDQNQLSLF
NT seq 4299 nt   +upstreamnt  +downstreamnt
gtgacaaaaaagaacgaacttttcaaaaaactattagatcaaatcaagtttcctgataag
tttgaagataacgatattgtccaaaatggtgaaattgaaaacgtggatgtatacgctaat
gaaagaaagtggaaaatccacgttttttttgatacaccattagattttgaaacttatcgc
tctcttaatgaacttattcatgagacttttgaaccatttgtgaatgttgaattattagtt
caaacacgcgatggaagtagtaaaaaactaccggcctactggacttatgccattcagaat
tcaactaacctaaaaccagcggttcgggaatttttacaaggacaagctccttatttagaa
aaagaaaaatggctaattcccactcaaaaccaagtagtaaatggcttgctttcagaacaa
gttttagcagaactaaataaagaattcagacgttatggtttctttaatatcaagtttaca
acgaaagttgatgaaactaatattgatgaaaatttaagaagtctagaacaagagcaggct
cagcatgagtctgctatgcaagaattctatgaaaaacaaccggcagaacctaagaaaaaa
atgcctgttaagagtacaagaatgggcaacaaaaaggtcgataaaaaagctaaatttatt
caaattaaagacttggaagatggcagtggaaacgtagctattgaaggacatatttttaac
acggatattcatgaattaaaatctggaagtgtaatttttactggtgagattactgactat
acagattcaattagctttaaaaaatttgtttctgacaaagatcaaattgattatctaaag
ggaattaaacctggcgtttgggctagaatgcaaggttatgcagctgatgatcaatatcaa
catgacgttgtttttaatattcgaaacttagaattaattgaacataagggtcgagaagaa
aagtatgaaggagagaaaaagcgtgtagaattgcaccttcatacaaatatgagtcaattg
gacgcaactagtacggcgagtgactttatcaaaactgcgaaaaaatttggtcaaaaggca
attgcaattacggatcatgcagatgtgcaatctttcccggaagcttatcatactggtgca
agcgaaaaaatgaaaattttatacggctatgaggccaatatgattgatgatcatgctttg
cttgttcttaatcctacggaaatggattatcggaatcgagaatatgtgatttttgacgtt
gaaacaacaggactatcttctgtttatgacaccattattgaaattggtgcggtaaaaatg
aaaaatggtgaggtcctagaaagattcgatgaatttatcaatccacatcatcccttgagc
gatacaacgattaacttaacatcaattactgatgaaatggttggtgcagctgatgatgaa
aaagatgtaattaagaaatttaaagaattttatggtgatcgtcctctctgtggacataat
gttcaatttgatgttgggtttgtaaatgcggctttacgccgtgcaggtctagaagaaatt
acgcaacctgttgttgacacgcttgaagtttcaagacttttgcatcctgaacaaactcgc
cacacccttgattctttagctaagaagtacaatgttgttcttgaacatcatcaccgcgct
aatcaagatgccgaagctacaggatacttaatgtttaaattgctagatgcttttaatgaa
cgttttcatgaagcagatttaggcaaaatgaatgactatgctaaatatggtcaagtttat
aagcgagctaagccaagtcatatgagtgttcttgctttaaatcaagaaggactaaaaaat
atgtacaagcttgtatcgcttgcaagtactaaatatttctatcgtattccacgtacccca
aagtcggaattaagaaaatatcataaaggtttattatttggtagtgggtgctggcaaggc
gatgtattcatttcaatgatgcaaaaaggatatgatgaagctcgtgaaaaagcacgtttt
tatgattatcttgaagtccaaccgccagcagcttatcaaaccttaattgaagatgatcta
attaaagatgaagacgagctgcatgaaattattcaaaatatttataaattaggtaaagaa
ttaaataaaccagtcgtagctaccagtgactcgcactatgttgaaccgcatgaagcaatt
tatcgtaaaattttattagcggctcaaaagggaaattctaatcgcaataagaatttaccg
gatttacatttttattcaacgcaggaaatgcttgatgcatttagctttttgggtgaagat
gtagctaaagaaattgtaattgataataccaataaattagccgatcaaattgaggaaatt
gctccgattaaaagtggactatatccacctcatattgaaaatgcggatcaagaaatgaag
gatttaacctataataaagcctacgaattatacggaaaacctttaccaaagattgtagaa
gatagaattgaacttgaattgaattctattatttcaaacggatatgcagttatttactta
atttctcaaaggcttgttgccaaatcaaataaagacggatatttagtagggtcacgtggg
tcagttggttctagtttagtagcgacgatgtctggaattacggaagtaaatcctttggct
ccgcactatcgttgtccgaattgcaagtattcaaaattctttgagaatggagaatatggg
tcaggatatgatttacctgacaaagagtgtccaaaatgtggaactccattagttaaagat
gggcaagatattccgtttgctactttcttaggattccatggagacaaggtgccggatatc
gatttaaacttctctggagactatcaaccagtagctcataactacattcgagttatgttt
ggtccagacaattcatttagagcggggacgattgcgactgttgctgataagactgcttat
gggtatgttaagcattatgaagatgaaaatgaactacatttaagaaaggctgagcttgat
cgtctagcagccggtgcttctggagtaaaaagaacaactggacaacacccagcaggtatt
gttgtagtgcccgatgatatggatatttatgactttactccagtccagtatccagcagat
gatttaagtgcagcttggcttacaactcactttgatttccattctatccatgataatatt
ttaaaatttgatattctgggtcacgatgatcctaccatgatcagaatgctacaggatcta
tccggagttgatccattaactattcctcctgatgatccgggagtaatgtctctcttctca
agtcctgaaattttaggtgttacctctgaacaaatccaatcaaaaacgggaacacttggt
gtaccagaattcggtacaaagtttgttagagggatgcttgaagaaacaaaaccaactact
ttctcagaattattgcaaatttctggcttatcgcacggtactgatgtatggttaggaaat
gcagaagacttaattaataatgggacttgtaagttgaagaatgtgattggttgtcgtgat
aacatcatgatggacttgattcactggggtgtaaaaccagaagttgctttctttacaatg
gaatctgtacgacatggtagaggaattagcgatgaaaatatggaaatcttgaaaaagaac
gataagattcctgattggtacattccctcatgtcttaagattaagtatatgttccctaaa
gcccatgctacagcctatatcctgatggcactgagaattgcttggtttaaagtatattat
ccagtaatttattatgcttcttacttctctgttcgtgctgacttgtttgatttggtagca
atgagtcacggcaagaatacagttaaagctgcaatgaaagaaattcaggataagggaatg
gatgtttctgcaaaagacaagtcattacttactgtacttgaaattgcaaatgaatgttta
gagcgtggaataaagattaagatggtagatgtaaacgaatctgaagccacagactttaag
attattgatgaccatacaatcttagcaccatttaatgctgttcctgggttaggtgacaat
gctgcaaagcaaattgtagctgcacgtgcggaacagaaatttctttcaaaagaagatctt
gccactcgcggcaaagtatcacaaacaattatggagtattttgaaaataatggtgttctt
gagggaatgcctgatcagaatcaattgtcactattttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (28)   

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