KEGG   Lactobacillus kefiranofaciens subsp. kefiranofaciens: WANG_1897
Entry
WANG_1897         CDS       T01526                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lke  Lactobacillus kefiranofaciens subsp. kefiranofaciens
Pathway
lke03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    WANG_1897 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lke03021]
    WANG_1897 (rpoB)
   03400 DNA repair and recombination proteins [BR:lke03400]
    WANG_1897 (rpoB)
Enzymes [BR:lke01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     WANG_1897 (rpoB)
Transcription machinery [BR:lke03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     WANG_1897 (rpoB)
DNA repair and recombination proteins [BR:lke03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      WANG_1897 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AEG41592
Position
2098463..2102032
AA seq 1189 aa
MKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFSGKLSLEYVGYKLQKPKYTVDEARN
HDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLMTESGSFIVNGAERVIVSQLVRSPG
VYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNVSYVRIDRTRKLPLTVLIRAMGIGS
DSDILDMFGQTDTLQFTLDKDVHKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYAR
FFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETLADPDTGEIIAKKDTVVTHEVMDKL
APYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSKVDPEREVKLMSNGHIAADVKHLTP
ADVLASINYFFALQDSIGTTDDIDHLGNRRIRRVGELLQNQFRIGLARMERVVRERMSIQ
DPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQHNSLGELTHKRRMSALGPGGLTRDR
AGYEVRDVHYTHYGRLCPIETPEGPNIGLISSLASYAIINKYGFIETPYRRVSWKTHKVT
DKIDYLTADEEDNYIIAGANTPLNDDGSFKSDLILARQKEDNVEVTPDKIDYMDVIPKQV
VSVASACIPFLENDDSNRALMGANQQRQAAPLINPHGSLVGTGMEYRAAHDSGAALIAKA
AGTVEYVDANEIRVRREDGTLDKYVLENYRRSNNSKSYNQTPNVKLGDHVDVSDVIANGP
TMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLVKDDVYTSISIEDYESEARDTKLGP
EEITRELPNIGDDALKDLDADGVVRIGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFG
EKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELSPGVNTMVRVYIAQKRKIQVGDKMS
GRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGVPSRMNIGQLLELHLGAAARQLGIH
VATPVFDGASEDDVWDTVRQAGVDKDGKTVIYDGRSGEPFHNRVSVGVMHYLKLTHMVDD
KIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGR
VKAYEAIVKGERIPKPGVPESFRVLVNELQSLGLDIRVLDINHKEIELRDMDEDSNEHLN
IDSLSRMAEEQEKKKLAEETGKSEDKKDDKETADKPVAPADESDGKVSK
NT seq 3570 nt   +upstreamnt  +downstreamnt
ttgaagttacctaacttaaccgatgtacaaaccgaatcatataagtggtttcttgataaa
ggcattaaagaagtcttcgacgacattatgccaatcagtgacttctcaggtaagctttca
ttagaatacgttggctataaattgcaaaagccaaagtacaccgttgatgaagctcgtaat
catgatgcaacttatgccgcaccaatgcacgttactttgaagttgactaaccaagaaact
ggtgaaattaagacccaggatgtattctttggcgatttgccattaatgaccgaatcaggt
tcatttattgttaacggtgccgaaagagttatcgtttcacaattggtaagatctccaggt
gtatattacactggcgattatgacaagaatggtcgtcaaatctttggtactacagttatt
cctaaccgtggtgcttggcttgaatacgaaactgatgctaagaatgtatcttacgttcgt
attgaccgtactcgtaagttgccacttactgtattgattagagctatgggaattggttct
gacagtgacatccttgacatgtttggtcaaaccgataccttgcaatttactttggacaaa
gatgttcataagaacccagcagactcacgtgtcgctgaagctttaaaggatatttatgaa
agacttcgtccaggtgaaccaaagacgactgattcatcacgttcacttttatatgctaga
ttctttgacccacgtcgttatgatttagctcctgttggtcgttacaagatcaataagaag
ctatcacttaagaaccgtttatacggtcaaactttagcagaaactttagcagatcctgac
actggtgaaatcatcgctaagaaggacactgtagttactcacgaagtaatggataaattg
gctccataccttgatcgcgatgacttcaagatggtaacttaccaaccttcaaaggaaggc
gtattaccagatcctattacagttcaagaaattaaggtctactcaaaggttgatcctgaa
cgtgaagttaagttaatgtctaacggtcatattgccgcagatgttaagcatttaactcca
gctgatgttttagcttcaatcaattacttctttgctttgcaagacagcatcggtactact
gatgatatcgaccacttaggtaaccgtcgtattcgtcgtgttggtgaacttcttcaaaac
caattcagaattggtttggcaagaatggaacgtgttgttcgcgaaagaatgtcaatccaa
gatccatcaactgttactccacaacaattgatcaacattcgtccaattgttgcaagtatc
aaggaattcttcggttcctcacaactttcacagttcatggaccaacacaactcattgggt
gaattgactcacaagcgtcgtatgtcagccttagggcctggtggtttgactcgtgaccgt
gccggatatgaagttcgtgacgttcactatactcactacggtcgtttatgtcctattgaa
acgccagaaggtcctaacattggtttgatcagctctcttgcttcatacgcaatcattaac
aagtatggtttcatcgaaactccataccgtcgtgtatcttggaagacccacaaggttacc
gataagatcgactacttgactgctgacgaagaagataactacatcattgccggtgctaac
actcctttgaacgatgatggttcatttaagagtgatttgattttagctcgtcaaaaggaa
gacaacgtcgaagttactccagataagattgactacatggacgttattcctaagcaggtt
gtttctgttgcttcagcatgtatcccattccttgaaaacgatgactctaaccgtgccttg
atgggtgccaaccagcaacgtcaggctgctcctttgattaatccacacggctcacttgtt
ggtactggtatggaatatcgtgctgctcacgattcaggtgctgcattaattgctaaggct
gctggtactgttgaatacgttgatgctaacgaaatccgtgtcagacgtgaagatggcact
ttagacaagtacgtacttgaaaattaccgtcgttcaaacaactctaagtcatacaaccaa
actcctaacgttaaattaggtgaccatgttgacgtaagcgatgtaattgccaatggtcca
actatggatcatggtgaacttgcattgggtcaaaacccactcattgctttcatgacttgg
aacatgtacaactacgaagatgccatcatgctttcagaacgtctggttaaggatgacgtt
tacacctcaatcagtattgaagactacgaatcagaagcacgtgataccaagcttggtcct
gaagaaattacccgtgaacttcctaacattggtgatgatgctttgaaggaccttgacgct
gatggtgttgttcgtatcggtgccgaagttcatgacggtgatattttggtaggtaaggta
actcctaagggtgtaaccgaattatctgctgaagaaagattgcttcacgctatctttggt
gaaaaagctcgtgaagttcgtgatacttcacttcgtgtaccacacggtggtggcggtatc
gttcaagacgttaaggtttatactcgtgaagccggcgatgaactttcaccaggtgtcaac
accatggttcgtgtctacattgcgcaaaagagaaagattcaagttggggacaagatgtct
ggtcgtcacggtaacaagggtacggttgctgccgttgttcctgaagaagatatgccatac
ttgccagatggtactccagtagatatttgtttgaacccaatgggtgttccatcacgtatg
aacattggacagcttcttgaattgcacttaggtgcagctgctcgtcaattgggtattcac
gtagcaactccagtatttgatggtgctagtgaagatgatgtttgggacacagttcgtcaa
gccggcgtagataaagatggtaaaactgttatctacgatggccgtagcggtgagccattc
cacaaccgtgtatcagttggtgttatgcactacttgaaacttactcacatggttgatgat
aagatccatgctcgttcaattgggccttactcattggttactcaacagcctttaggtggt
aaagctcagtttggtggtcagcgttttggtgaaatggaagtttgggctcttgaagcttat
ggtgctgcttacacattgcaagaaattttaacttacaagtcagatgacgttgttggtcgt
gtaaaggcatacgaggctattgttaagggcgaaagaattccaaagccaggtgttccagaa
tcattccgtgttcttgttaatgaacttcaatcattaggtttggatattcgtgttcttgat
ataaaccataaagaaattgaacttcgtgatatggatgaagattcaaatgaacacttgaat
attgattctttatcacgcatggcagaagaacaagaaaagaagaagttagccgaagaaact
ggaaaatcagaagataaaaaagatgataaagaaactgcagataagccagtagctcctgca
gatgaatctgacggaaaagtttctaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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