KEGG   Lactococcus lactis subsp. lactis Il1403: L0137
Entry
L0137             CDS       T00045                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lla  Lactococcus lactis subsp. lactis Il1403
Pathway
lla03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    L0137 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lla03021]
    L0137 (rpoB)
   03400 DNA repair and recombination proteins [BR:lla03400]
    L0137 (rpoB)
Enzymes [BR:lla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     L0137 (rpoB)
Transcription machinery [BR:lla03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     L0137 (rpoB)
DNA repair and recombination proteins [BR:lla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      L0137 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: AAK05898
UniProt: Q9CEN6
Position
complement(1860915..1864505)
AA seq 1196 aa
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTLSYKNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKTPKYTVEEARAHDANYSAPIYVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKADKNGLESFGHTTIPNRGAWFELDTDAKGIG
YVRIDRTRKLTFTTMLRALGFGSDEEILELLGETQLLTDTIAKDVHKNPADTRVEEALKD
IYDRLRPGEPKTADSSRGLLVARFFDPKRYDFAPVGRYKFNKKLALKNRLLGLTLAEPIV
DPETGEILVNTDTLVTRDVLDLIEPLLDNGLGNFVVEPSDDAVIPEPITLQSIKVYSPKD
PERVVTLLSNGNPDAECRVLTPADVISNISYWLGLAEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENITPQGLINIRPVTASIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
VNEYGFIMSPYRRVDRVNGVVTDEVEYLTADEEDNYTVAQANSPLTEDSRFANETVMARH
TGNNIEVEASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAALIAKHAGVVEYVDGNEIRVRRTSGELDIYNITKYRRSNSGTSY
NQRPLARLGEKVEKGDIIADGPSMENGEMALGQNPLVAYMTWEGYNFEDAVIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNVGDEALKNLDESGIIRIGAEVKDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFIAQKRKIHVGDKMAGRHGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGE
PFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQSLGLDMKV
LDADRNVLDLRELDEDEVMTRPDNTEITPEMLEAQEAIVAQAEAEEEALINADTEK
NT seq 3591 nt   +upstreamnt  +downstreamnt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgtatt
aaagaagtaatcggtttgccaaacctcatcgaagttcaaacattaagttataaaaacttc
ctcgatgaaggtcttgcaaatgtcttcaaagaaatgtttccaatcgacaactttgcgggt
acaatggaactcgaatttgttggttatgaaatgaaaaccccaaaatacactgttgaagaa
gctcgcgcacatgacgcaaactattcagcacctatctatgtaaccttccgtcttgtaaat
aaagaaactggtgaattaaaaacacaagaagtcttctttggtgacttcccactcatgact
gaaatggggacatttatcaataacggttcagaacgtttgatcgttagccaattggtacgt
agtcctggttcatacttccatcttaaagctgataaaaacggtcttgaaagttttggacat
acaaccattcctaaccgtggagcttggtttgagttagatacagatgctaaaggcattggt
tatgttcgtattgaccgtacacgtaaattaacttttacaactatgcttcgtgcgcttgga
tttggttcagatgaagaaatccttgaattgttgggcgaaactcaacttttaacagacact
attgcaaaagatgttcataaaaacccagctgacacgcgtgtagaagaagcgctcaaagac
atctatgaccgcttgcgtccaggagaacctaaaacagcagatagctcacgtggcttgctt
gttgctcgtttcttcgatccaaaacgttatgacttcgcacctgttggacgttacaaattt
aacaagaaattagcgcttaaaaatcgtttgcttggtttgactttggctgaaccaattgtt
gacccagaaactggtgaaattcttgttaatacagatactcttgttactcgtgatgtgctt
gatttaatcgaaccattgcttgataacggtcttggaaactttgttgttgaaccatctgac
gacgctgtaattccagaaccaattactttgcaaagtatcaaagtttattcacctaaagat
ccagaacgtgttgttacattgctctcaaatggtaatcctgatgcagaatgccgtgtcttg
acaccagccgatgtgatttcaaatatcagctactggcttggtcttgctgaaggaattggt
aaagtggacgatattgaccacttaggtaaccgtcgtatccgttcagtaggtgaattgctt
caaaaccaagtacgtatcggactttcacgtatggaacgtgttattcgcgaacgtatgtca
tcttcagaaaatgaaaacatcacaccgcaaggtttgattaacattcgtcctgtaacagct
tcaattaaagaattctttggttcatcacaattgtcacaatttatggaccaacacaatcct
ttatctgagctttcacacaaacgtcgtttttctgccttaggacctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgttcactatactcactatggccgtatgtgtcct
attgaaacacctgaaggaccaaacatcggtttgattaacaacttgtcatcatatgccaaa
gtaaacgaatatggtttcatcatgtcaccataccgtcgtgttgaccgtgtgaatggtgtg
gttactgacgaagttgaatatttaactgccgatgaagaagacaactatactgttgcccaa
gcaaactcaccattgactgaagatagccgctttgctaacgaaacagttatggctcgtcat
actggtaacaatattgaagttgaagcttcaacagcagactatatggacgtttcacctaaa
caggttatcgccgttgctgctgcatgtattccattcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaagcagttccattgattgacccacatgcacct
tggattggtactggtatggaacatcaaactgctcgtgactcaggtgctgcgcttattgca
aaacatgctggtgttgttgagtatgttgatggtaatgaaattcgtgttcgtcgtacttct
ggtgaactagatatttacaatattacaaaatatcgtcgttcaaactcaggaacttcttat
aaccaacgtccattggctcgacttggagaaaaagttgagaaaggggacatcattgctgat
ggaccttctatggaaaatggagaaatggcccttggtcaaaatccacttgttgcctatatg
acttgggaaggttataacttcgaggatgcggtaatcatgtcagaacgtttgattaaagac
gacgtttatacatcaattgccatcgaagaatatgaatcagaaacacgcgatacaaaactt
ggccctgaagaaattactcgtgaaattccaaacgttggggatgaagcactcaaaaacctt
gatgaatcaggaattatccgtattggtgctgaagttaaagatggcgacttgcttgttggt
aaagtaacccctaaaggtgaaactgatccaacaccagaagaacgtttgcttcgtgcaatc
tttggtgaaaaagctcgtgaagttcgtgatacatcacttcgtgttcctcacggaggtggc
ggtattgttcatgacgttcgtgtatttacacgcgaaaatggtgatgaattgccatcaggt
gtgaataaacttgttcgcgtcttcattgctcaaaaacgtaagattcacgttggggataaa
atggccggacgtcatggtaataaaggggttgtttcaaatatcgttccaatggaagatatg
ccttacttaccagatggtacacctattgatatcatgttgaacccacttggggtaccatca
cgtatgaatatcggacaagttatggagctccatttaggtatggctgctcgtacacttgga
attcacattgcaactccagtgtttgatggagcatctgatgaagatatctgggataccgtt
aaagaagctggaatggctgatgatgcgaaaacagtcctttatgacggacgtactggtgaa
ccatttgataaccgaatttcagtcggtgtcatgtacatgattaaacttcaccacatggtt
gatgataaactccatgctcgttcagttggtccttactcactcgttacacaacaaccgctc
ggtggtaaagcgcagttcggtggacaacgttttggggaaatggaagtttgggcacttgaa
gcctatggtgctgccaatgttcttcaagaaatcttgacttacaaatcagatgacgtgatt
ggacgtacgcgcgcttatgaagctattgttaaaggtgaacgtattcctaaaccaggtctt
cctgaatcattccgcgtattggttaaagagttacaatcacttggtcttgatatgaaagtc
cttgatgctgaccgtaatgttcttgacttacgtgaattggatgaagatgaagtaatgact
cgtccagataatacagaaattactcctgaaatgcttgaagcacaggaagctattgttgca
caagcagaagctgaagaagaagctttgattaacgctgatactgaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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