KEGG   Lactococcus lactis subsp. cremoris SK11: LACR_1981
Entry
LACR_1981         CDS       T00420                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
llc  Lactococcus lactis subsp. cremoris SK11
Pathway
llc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:llc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LACR_1981
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:llc03021]
    LACR_1981
   03400 DNA repair and recombination proteins [BR:llc03400]
    LACR_1981
Enzymes [BR:llc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LACR_1981
Transcription machinery [BR:llc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LACR_1981
DNA repair and recombination proteins [BR:llc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LACR_1981
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: ABJ73463
UniProt: Q02X59
Position
complement(1872498..1876088)
AA seq 1196 aa
MAGHDIKYGKHRTRRSFSRIKEVIGLPNLIEVQTLSYKNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKTPKYTVEEARAHDANYSAPIYVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKTDKNGLESFGHTTIPNRGAWFELDTDAKGIG
YVRIDRTRKLTFTTMLRALGFGSDDEILELLGETQLLTDTIAKDVHKNPADTRVEEALKD
IYDRLRPGEPKTADSSRGLLVARFFDPKRYDFAPVGRYKFNKKLALKNRLLGLTLAEPIV
DPETGEILVNTDTLVTRDVLDLIEPLLDNGLGNFVVEPSDDAVIPEPITLQSIKVYSPKD
SERVVTLLSNGNPDSECRVLTPADVISNISYWLGLAEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENITPQGLINIRPVTASIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
VNEYGFIMSPYRRVDRVNGIVTDEVEYLTADEEDNYTVAQANSPLTDDSRFANETVMARH
TGNNIEVEASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAALLAKHAGVVEYVDGNEIRVRRTSGELDIYNITKYRRSNSGTSY
NQRPLARLGEKVEKNDIIADGPSMENGEMALGQNPLVAYMTWEGYNFEDAVIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNVGDEALKNLDESGIIRIGAEVKDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFIAQKRKIHVGDKMAGRHGNKGVVSNIVPVEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASDEDIWDTVKEAGMAADAKTVLYDGRTGE
PFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQSLGLDMKV
FDADRNVLDLRELDEDEVMTRPDNTEITPEMLEAQEAIVAQAEAEEEALINADIEK
NT seq 3591 nt   +upstreamnt  +downstreamnt
ttggcaggacatgacataaaatacggtaaacaccgtacaagacgcagtttttcacgtatt
aaagaagtaatcggtttgccaaacctcatcgaagttcaaacattaagttataaaaacttc
ctcgatgaaggtcttgcaaatgtcttcaaagaaatgtttccaatcgacaactttgcgggt
acaatggaactcgaatttgttggttatgaaatgaaaaccccaaaatacactgttgaagaa
gctcgcgcacatgacgcaaactattcagcacctatctatgtaaccttccgtcttgtaaat
aaagaaactggtgaattaaaaacacaagaagtcttctttggtgacttcccactcatgact
gaaatggggacatttatcaataatggttcagaacgtttgatcgtcagtcagttggtacgt
agtccaggttcatatttccaccttaaaacggataaaaatggtcttgaaagttttggacat
accacaattcctaaccgtggagcttggtttgagttggatacagatgctaaaggcattggt
tatgttcgtattgatcgtactcgtaaattaactttcacaacaatgcttcgtgcgcttgga
tttggttcagatgacgaaatccttgaattgttgggtgaaactcaacttttgacagacaca
attgcaaaagatgttcataaaaatccagctgacactcgtgtagaagaagccctcaaagac
atctatgaccgcttgcgtccaggagaaccaaaaacagcagacagctcacgtggcttactt
gttgcgcgtttcttcgatccaaaacgttatgattttgctcctgttggacgttataaattt
aacaaaaaactagctcttaaaaatcgtttgcttggtttgactttggctgagccaattgtt
gatccagaaactggcgaaattcttgttaatacagatacacttgtgactcgtgacgtgctc
gatttaatcgaaccattgcttgataatggtcttggaaacttcgttgttgaaccttctgac
gatgcagtaattccagaaccaatcactttgcaaagtattaaagtttattctcctaaagat
tcagaacgtgttgtgacattgctctcaaatggtaatccagattcagaatgtcgtgtcttg
acaccagccgatgttatttcaaacatcagctactggcttggacttgctgaaggaattggt
aaagtagacgatattgaccacttaggtaaccgtcgtattcgttcagttggtgaattactt
caaaaccaagtacgtatcggactttcacgtatggaacgtgtcattcgtgaacgtatgtca
tcttcagaaaacgaaaatatcacaccgcaaggtttgattaacattcgtcctgtaacagct
tcaatcaaagaattctttggttcatcacagttgtcacaatttatggaccaacataatcct
ttgtctgagctttcacacaaacgtcgtttctctgccttaggacctggtggtatctctcgt
gaccgtgcttcatatgaagtgcgtgacgttcactacactcactatggccgtatgtgtcct
attgaaacacctgaaggaccaaacatcggtttgattaacaacttgtcatcatatgccaaa
gttaatgaatatggtttcatcatgtcaccatatcgtcgtgttgaccgtgtgaatggaatt
gttactgacgaagttgaatatttgactgccgatgaagaagataactacactgtagcccaa
gcgaactcaccattgactgatgacagtcgttttgctaacgaaacagttatggctcgtcat
acaggtaacaatattgaagttgaagcttcaacagctgactatatggatgtttcacctaaa
caggttatcgccgtcgctgctgcttgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaagcagttccattgattgacccacatgcacct
tggattggtactggtatggaacatcaaaccgctcgcgactcaggagctgcccttcttgct
aagcatgcaggtgtagttgaatatgttgacggtaatgaaatccgtgttcgccgtacatct
ggtgaacttgatatttacaatattacaaaatatcgtcgttctaactcaggaacttcttat
aatcaacgtccattggctcgtcttggcgaaaaagttgaaaaaaacgacatcatcgctgac
ggtccatctatggaaaatggagaaatggcccttggtcaaaatccactcgttgcctatatg
acttgggaaggttataacttcgaggatgccgtaatcatgtctgaacgtttgattaaagat
gacgtttatacatcaatcgcaatcgaagaatatgaatcagagactcgcgatacaaaactt
ggccctgaagaaattacacgcgaaattccaaacgtcggggatgaagcactcaaaaacctt
gatgaatctggaattatccgtattggtgccgaagttaaagatggtgatttgcttgttggt
aaagtaacacctaagggtgaaactgacccaacaccagaagaacgtttgcttcgtgcaatc
ttcggtgaaaaagctcgtgaagttcgtgatacttcacttcgtgttcctcacggtggaggc
ggtatcgttcatgacgttcgcgtatttacccgtgaaaatggtgatgaattaccatcaggt
gtgaataaactcgttcgtgtcttcattgctcaaaaacgtaagattcacgttggggataaa
atggccggtcgtcacggtaacaaaggggttgtttcaaatatcgttcccgtggaagatatg
ccttacttaccagatggaacaccgattgatatcatgttgaacccacttggggtaccatca
cggatgaatattggacaagttatggagctccatttaggtatggctgctcgtacacttggt
attcacattgcgacaccagtgtttgatggagcctctgatgaagatatctgggatactgtt
aaagaagctggtatggctgctgatgcgaaaacagttctctatgacggacgtactggtgaa
ccatttgataaccgaatttcagtcggtgtcatgtacatgattaaacttcaccacatggtt
gatgataaactccatgcacgttcagttggtccttactcactcgttacacaacaaccgctc
ggtggtaaagcacagttcggtggacaacgtttcggggaaatggaagtttgggcgcttgaa
gcttatggtgctgccaatgttcttcaagaaatcttaacttacaaatcagatgacgtaatt
ggacgtacgcgcgcctatgaagctatcgttaagggtgaacgtattcctaaaccaggtctt
cctgaatcattccgcgtattggttaaagaattacaatcacttggtcttgatatgaaagtc
ttcgatgctgatcgtaatgttcttgacttgcgtgaattggatgaagatgaagtaatgact
cgtccagataatacagaaattactccggaaatgcttgaagcacaagaagcaattgttgca
caagcagaagctgaagaagaagctttgattaacgctgatattgaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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