KEGG T02485: lilo

Lactococcus lactis subsp. lactis IO-1: lilo_1120

Entry

lilo_1120         CDS       T02485

Symbol

topA

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

lls Lactococcus lactis subsp. lactis IO-1

Brite

KEGG Orthology (KO) [BR:lls00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lls03032]
    lilo_1120 (topA)
   03400 DNA repair and recombination proteins [BR:lls03400]
    lilo_1120 (topA)
Enzymes [BR:lls01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     lilo_1120 (topA)
DNA replication proteins [BR:lls03032]
Prokaryotic type
  DNA Topoisomerases
   lilo_1120 (topA)
DNA repair and recombination proteins [BR:lls03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      lilo_1120 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim DUF2996 DUF5091 C1_2

Other DBs

NCBI-ProteinID:

BAL51119

Position

1205400..1207532

AA seq 710 aa
MPTSTKSKTKKTTKKKTTRKRVTPGKNLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDL
KKSTMSVDIENDYEPQYINIRGKAPLINSLKKEAKAAKAVYLASDPDREGEAISWHLAHI
LNLPLEEKNRVVFNEITKDAVKNAFKEPRQIDVDLVDAQQARRVLDRLVGYSISPILWKK
VKKGLSAGRVQSIALKLIVDRENEINAFIPEEYWSIDGEFKKGTKKFKASFWGIDGKKHP
LKTNEDVIKVMERLDGPDFNVDKVEKKERRRNAPLPYTTSSMQQDAANKLNFRTRKTMMV
AQQLYEGLTLGSQGHQGLITYMRTDSTRISPVAQSAAHNYIADQFGEKYSKHGSKVKNAS
GAQDAHEAIRPSNVFNTPDAIAKYLDKDQLKLYTLIWNRFVASQMVAAIFDTVKVNLSQN
GVIFIANGSQVKFDGYLRIYNDSDKSNMLPEMEENETVKKANVKPEQHFTQPPARYSEAT
LIKTLEENGVGRPSTYAPTLETIQKRYYVRLSAKRFEPTELGEIVNKLIVEFFPNIVNTE
FTAEMEKDLDEVEEGKRQWIEVVDQFYKPFAKELENAEEGMEKIQIKDEPAGFDCDVCGS
PMVIKLGRFGKFYACSNFPDCRNTKAIVKEIGVKCPLCHEGNIIERKTKKNRIFYGCDRY
PECEFTSWDKPIGRDCPKSGHFLVEKKVRGGGKQVVCSNDECDYQEEKQK

NT seq 2133 nt +upstreamnt +downstreamnt
atgccaacttcaactaaaagtaaaacaaaaaaaactacaaagaaaaaaacaacacgaaaa
agagtcactccaggtaaaaatctggttattgtagaatcgccagcaaaagctaaaacaatt
gaaaaatatttaggtcgaaactacaaagttgtggcttcagtaggtcatattcgtgatttg
aaaaaatcaaccatgtctgttgatatagagaatgactatgaacctcaatatattaatatt
cgtgggaaagccccattaatcaactctctcaaaaaagaagcaaaggctgccaaagccgtc
tatctcgcaagtgacccggaccgtgaaggtgaagcaatttcttggcacttagcacatatc
ttaaatcttccacttgaagaaaaaaatcgagtggtctttaatgaaatcactaaagatgct
gttaaaaatgcctttaaggagccgcgtcaaattgatgtggatctagttgatgcccaacaa
gcacgccgagttcttgaccgtttggtgggttattcaattagtcctattctatggaaaaaa
gtcaaaaaaggactctcagcaggtcgagttcaatctattgccttaaaactaattgttgac
cgcgagaatgaaattaatgcttttattccagaagagtattggtcaattgatggtgaattt
aaaaaaggaactaaaaaattcaaagcatccttctggggaattgacggaaaaaaacatcct
ttaaaaaccaatgaagatgtcatcaaagtcatggaacgtttagatggtcctgattttaac
gtagataaagttgaaaaaaaagaacgtcgcagaaacgctcctcttccttatacaactagc
tcaatgcaacaagacgcggctaataaacttaactttcgtacccgtaaaacaatgatggtt
gctcaacaactttatgaaggtcttactttaggaagtcagggccatcaaggcttaattacc
tatatgcgtacagactcaacacgtatttctcctgtcgcacaaagtgcagctcacaattat
attgctgatcaatttggagaaaaatatagtaaacacggttcaaaagttaaaaatgcctct
ggagcccaagatgcccacgaagcaattcgaccttcaaatgtctttaacactccagacgcc
attgctaaatatctagacaaagatcaattaaaactttacacactcatctggaaccgtttc
gtagccagtcaaatggtcgcagctatttttgatactgttaaagtaaatctgtctcaaaat
ggtgttatctttattgcgaatggttcacaagtgaaatttgacggttatctgcgaatctac
aatgattctgataaatcaaatatgctcccagagatggaagaaaatgaaactgtcaaaaaa
gcgaatgttaaaccagaacaacatttcactcaaccaccagctagatattccgaagcaaca
ctcatcaagacattggaagaaaatggagtgggacgtccctcaacttatgcgcctacacta
gaaacaattcaaaaacgttattatgtgagattatcagcaaaacgttttgagcctacagag
cttggagaaattgtcaataagcttattgttgagttcttccctaacattgtaaatactgaa
tttacagctgaaatggaaaaagatcttgatgaagttgaagagggaaaacgtcaatggatt
gaggttgttgaccaattttacaaaccctttgcaaaagaacttgaaaatgccgaagaaggt
atggaaaaaatccaaatcaaggatgaacctgctggctttgactgtgatgtttgtggaagt
ccgatggtaattaagttgggacgtttcggaaaattttatgcttgtagcaacttcccagat
tgccgaaatactaaggcaattgtcaaagaaatcggcgtaaaatgtccgctttgtcatgaa
ggaaatattatcgaacgcaaaacaaagaaaaatagaattttctatggttgtgatcgttac
ccagaatgtgaattcacaagttgggacaaacctatcggacgtgattgtcctaaatctgga
cattttcttgttgaaaagaaagttcgtggtggcggtaaacaagtggtatgttcaaatgat
gaatgtgattatcaagaagaaaaacaaaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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