KEGG   Labilithrix luteola: AKJ09_09606
Entry
AKJ09_09606       CDS       T04033                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
llu  Labilithrix luteola
Pathway
llu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:llu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AKJ09_09606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:llu03400]
    AKJ09_09606
Enzymes [BR:llu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AKJ09_09606
DNA repair and recombination proteins [BR:llu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AKJ09_09606
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DNA_primase_S CT_584-like mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AKV02943
UniProt: A0A0K1QB33
Position
10130248..10132815
AA seq 855 aa
MARGDGDGTSRRRRRAPAPKRGSALRTYQELRDFESTSEPTAQIRPSATGRSFVVQQHAA
TAMHYDFRLELDGVLKSWAIPKGPSLSPTDKRLAVQTEDHPVDYRDFEGSIPEDQYGGGP
VIVWDRGEWQPKGNPDEGLQKGRLEFSLRGEKLHGAFVLVRMPDRQASPSRKKKDTWLLI
KRRDSFARDDGASSVVTRLPRSVLTDRTIEDIEAGAPALPKRTTSKEASTRARTAKMPRF
GAIEPQLATLVGAVPVAGPTTVGDWIYEIKYDGYRAITTLDHGEVQIASRNGKDWTSKFP
EIAEAVSRIRAKQAVFDGEIAYVLPDGRTDFQHLQNALGAAAKERAQIVYFVFDLLYFDG
VDLRDEPLITRKDTLRTILAYEKPPLRLADHVDERGETFFTHACKAGLEGIIAKRADRPH
VSGRGRDWVKVKCQKRQEFAIVGFTPPKGSRSGIGALLLAVHRGGRYQYAGKVGTGFTAR
TLQDLRKRLDKLTDGAKAPDGAPRMKDAVWVEPKLVGEVRFTEWTKDGVLRHPSFEGLRI
DKKPAEVVRETGDNRVLGITITHPERIVDRTLGLTKLDLARYHEAVAERLLAFAKKRPLM
LVRCTESWTADKLGPLQGTKAKRACFVQKHGGRGLTANIGHSDVEGEEVLYVQKPREVIE
LVQFNAIELHGWGSTLPRFDRPDWIVFDLDPDEALGFDKVVEAALALRASLGAIGLVSFV
KTTGGKGLHVVVPLNRRDGWEAVRTFAEDVARAFAEQASDKYVANMSKAKRRGKVFIDYL
RNAQGATAVLPYSPRARPGTPVAMPVAWNDLEHLDPRELDVFSVPKLLAKQKKDPWAGLL
QTSQSLGRAKRAKTK
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggcgcgcggcgacggcgacgggacttcacgacgtcgccggcgcgcgcccgccccaaag
agaggttcggctctccgaacgtaccaagagctccgggacttcgagtccacgagcgagccc
accgcccaaattcgtccgtcggcgacgggtcgatcgttcgtcgtgcagcagcacgccgcg
acggccatgcattacgactttcggctggagctcgacggtgtgctgaagagctgggcgatc
cccaagggccccagcctctcgccgacggacaaaagactcgccgttcaaaccgaggatcac
ccggtcgactaccgagacttcgaaggctcgatccccgaagatcagtacggcggcgggccg
gtcatcgtctgggatcgcggcgaatggcagcccaagggcaacccggacgagggcctccaa
aaggggcgccttgagttttccctccgcggagagaagctccacggggccttcgtgctcgtg
cgcatgcccgaccgccaagcgagcccttcgcggaagaagaaagacacctggctgctcatc
aagcgccgcgattcgttcgctcgcgacgatggggcgagctcggtggtcacacgcttgccg
cgaagcgtcctcaccgatcgaaccatcgaagacatcgaagccggagcccccgccttgccc
aaacgaaccacgtcgaaggaagcatcgacgcgcgcccgtaccgccaagatgcctcgcttc
ggcgctatcgagccgcaactcgccacgctcgtgggcgcggtgcccgtcgctggaccgacc
acggtcggcgactggatctacgagatcaagtacgacggctatcgcgccatcacgacgctc
gatcacggcgaggtccagatcgcctcacgcaacggcaaggattggacctccaagttcccc
gagatcgccgaggccgtgtcgcgcatccgcgcgaagcaggccgtgttcgacggcgagatt
gcctacgtcttgccggacggacgcaccgacttccagcacctgcagaacgcgctcggtgca
gccgcgaaggagcgcgcgcagatcgtctacttcgtcttcgacctgctctacttcgacggt
gtcgatctccgcgacgaaccgctgatcacacgcaaggatacgctccgcaccatcctcgcg
tacgagaagccgccgctgcggctcgccgatcacgtggacgagcgcggcgaaacgttcttc
acccacgcctgcaaggccgggctcgagggcatcatcgccaagcgcgccgatcgcccgcac
gtgagcggacgcgggcgcgattgggtgaaggtgaagtgccagaagcgacaagagttcgcc
atcgtcggcttcacgcccccgaaggggtcacgcagcggcatcggcgcgctgcttctcgcc
gtgcaccgcggaggccggtaccagtacgccggcaaggtcggcacgggcttcaccgcccgg
acgctccaggatctgcgcaagcgcctcgacaagctcaccgacggcgccaaagcccccgat
ggggccccgcgcatgaaagacgcggtttgggtcgagccgaagctcgtcggcgaagtccgg
ttcaccgagtggaccaaggatggagtccttcgccatccctcgttcgaaggacttcgcatc
gacaagaaacctgccgaggtcgtgcgcgagacgggcgacaaccgcgtgctcggcatcacc
atcacgcatcccgaacgcatcgtcgaccgcacgctcggcctgacgaaactcgatctcgcg
cgctaccacgaggccgtggcggagcgcctgctcgccttcgccaagaagcggccgctcatg
ttggtgcgctgcacggaatcgtggaccgccgacaagctcggcccgctccagggtacgaaa
gccaagcgagcctgcttcgtccagaagcacggaggtcgagggctcaccgcgaacatcggc
cactccgacgtcgaaggcgaggaagtgctctacgtgcagaaacctcgcgaggtgatcgag
ctcgtccagttcaacgccatcgagctccacggatggggttccacgctcccgcgcttcgat
cgtcccgattggatcgtgttcgatctcgatccggacgaagccctcgggttcgacaaggtc
gtcgaagcggccctcgccctccgcgcttcgctcggcgcgatcgggctcgtgagcttcgtc
aagacgacgggcggcaaaggcctgcacgtcgtcgtgcctctgaatcgtcgcgatggttgg
gaagccgtgcgcacgttcgccgaagacgtcgcccgggcgttcgccgagcaagcgtcggac
aagtacgtcgccaacatgtccaaggcgaagcgtcgggggaaggtcttcatcgactacctg
cgaaacgcgcaaggcgcgaccgcggtgcttccctattcgcctcgcgcccgcccgggtacc
ccggtggcgatgccggtggcctggaacgatctcgagcacctcgatccacgcgagctcgac
gtgttctcggtgcccaagctcctcgccaagcagaagaaagatccgtgggccggccttctc
cagacctcccagtcgctcgggcgagccaagcgcgccaagacaaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (38)   

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