KEGG   Leishmania major: LMJF_30_0540
Entry
LMJF_30_0540      CDS       T01014                                 
Name
(RefSeq) putative nuclear cap binding protein
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
lma  Leishmania major
Pathway
lma03013  Nucleocytoplasmic transport
lma03015  mRNA surveillance pathway
lma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LMJF_30_0540
  09122 Translation
   03013 Nucleocytoplasmic transport
    LMJF_30_0540
   03015 mRNA surveillance pathway
    LMJF_30_0540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lma03019]
    LMJF_30_0540
   03041 Spliceosome [BR:lma03041]
    LMJF_30_0540
Messenger RNA biogenesis [BR:lma03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     LMJF_30_0540
Spliceosome [BR:lma03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    LMJF_30_0540
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 5653579
NCBI-ProteinID: XP_001684644
UniProt: Q4Q7Q2
Position
30:complement(176909..177475)
AA seq 188 aa
MSSDLVDTVPRMEYVDRHELLRSLLTAEEFRERRQEQLNYSTTVYVGNLSFYTTEEQVCN
HFSPCGHIRDIVMGLNEATRCPCGFCFVVFESQAAAVLAVHGLDGSLLDDRVVSVSWDVG
CDGSRRWGRGAHGGQVVDGVRQNLDEGRGGLGALRRDALGVPASTAEDELVAYDWVEASP
KRRGAHTK
NT seq 567 nt   +upstreamnt  +downstreamnt
atgtcgagtgatttggtggacacggtcccccgaatggagtatgtggatcgccacgagttg
ctccggtctctcttgacggcggaggagttccgggagcggcggcaggagcagctcaactac
agcaccaccgtttacgtgggcaacttgtccttctacacgacggaggagcaggtgtgcaat
cacttcagtccttgtggacacatccgcgatatcgtgatgggcctcaacgaggcgacacgc
tgcccatgcgggttttgctttgtcgtgttcgagtcacaggcggccgcggtactggcggtg
cacggactcgacgggtcactgctggacgaccgcgtcgtgtccgttagctgggatgtgggc
tgcgacgggagtcgccgctggggccgtggcgctcacggcggccaagtggtagacggcgtt
cgccaaaacctcgacgagggtcgcggtggcttgggcgccctgcggcgcgacgcgctgggc
gtgcctgcctcgaccgcggaggacgagctggttgcctacgattgggtagaagcctcaccg
aagcgcagaggtgcccacacaaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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