KEGG   Lysobacter maris: C9I47_0074
Entry
C9I47_0074        CDS       T05495                                 
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lmb  Lysobacter maris
Pathway
lmb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lmb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    C9I47_0074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lmb03400]
    C9I47_0074
Enzymes [BR:lmb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     C9I47_0074
DNA repair and recombination proteins [BR:lmb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     C9I47_0074
SSDB
Motif
Pfam: AAA_19 AAA_30 AAA_11 UvrD_C_2 Viral_helicase1 UvrD-helicase Helicase_RecD AAA_22 SH3_13 Mg_chelatase UvrD_C T2SSE SLFN-g3_helicase nSTAND3 Phageshock_PspD Herpes_Helicase DEAD MeaB FtsK_SpoIIIE Rad17 NACHT NTPase_1 AAA_29 TrwB_AAD_bind
Other DBs
NCBI-ProteinID: AWV05800
UniProt: A0A2U9TBW8
Position
99092..101140
AA seq 682 aa
MSAPSLLSALWRGGQLRTLDHAFAQSLLRLDRDTPDEVLAAAALASLAVSRGDAGLLLAR
PQALLDADGGIAWPDPEAWRARLTASRWVAAPADAGAESDPAAPLVLEHGLLYLRRYREY
ERRLAEGLRRIGRQRPPVADLAALAPLFERLFPADFADLARTEAARGRGDDRQARAAAAA
LRHALLLVTGGPGTGKTTTITRLLVLLAAQARTQDRAPPRIALAAPTGRAAERMAGSLRA
ARTRLAADGVDPALLERLPRTGTTLHRLLGTVPDTPRFRHHADNPLPFDVVVVDEASMID
LPLMAKLVEAVPDGARLVLLGDPDQLPSVEAGDVLGGILRAAGAGGALAAEDAEALQPLL
GAGTDAAPAAVEPGHTGDLFAAPPAVAVAAAAPAAGMPATGFPGARVHLLRGYRQHESLQ
LAPLAEAVRDGDAARALALLRDGALAGIDFHEGSPDPLVVHRERLLAHARALADADGPAD
ALAIAGRLRLLTALRDGPSGARTLNARIEALIAEAGGGRGTPGHGTRGHGTSGHFHGQPL
LITENSYRHGLFNGDIGVCLADDRGVLTAWFAGNAPGSAAAGDTGNDGPVPPRPFHPAAL
PAHESAFAMTVHKAQGSEFDEVWLQLPARDTRVLSRELVYTGLTRAKTRLHLAAPADIIE
TALARHASRVSGLGWRLGGGGG
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgagcgcgccgtccctgctgtcggccctgtggcgcggcggccagctgcgcacgctcgac
cacgcattcgcgcagagtctgctgcggctggatcgcgacaccccggacgaggtcctcgcc
gccgccgcgctggcctcgctggcggtgtcccgtggcgatgccggcctgctgctcgcgcga
ccgcaggcgctgctcgatgccgacggcggcatcgcctggccggacccggaggcctggcgg
gcgcggttgaccgcctcgcgctgggtcgccgcgccggccgatgccggcgccgagtccgac
ccggccgcgccgctggtgctggagcacggcctgctttacctgcgccgctaccgtgagtac
gagcgccggctggccgagggcctgcgccggatcggccggcagcgtccgcccgtcgccgac
ctcgccgcgctggcgccgctgttcgagcggctgtttccagcggatttcgcagatctcgcg
cgcaccgaggcggcgcgcggccgtggcgacgaccgccaggcccgcgccgccgccgccgcg
ctgcgtcacgccctgctgctggtcactggcgggcccggcaccggcaagaccaccaccatc
acccgcctgctggtgctgctcgccgcgcaggcgaggacgcaggaccgggcaccgccgcgg
atcgccctggccgcgcccaccggtcgcgccgccgaacgcatggccggcagcctgcgcgcc
gcccgcacccggctcgccgccgacggcgtcgaccccgcgctgttggagcggctgccgcgc
accggcaccaccctgcaccgcctgctcggcaccgttccggataccccgcgcttccgtcat
cacgccgacaacccgttgccgttcgacgtggtggtggtcgacgaggcctcgatgatcgac
ctgccgttgatggccaagctggtcgaagcggtgcccgacggcgcccgtctggtcctgctc
ggcgatcccgaccagctgccctcggtcgaggccggcgacgtgctcggcggcatcctgcgc
gcggccggcgctggcggcgccctggcggccgaagacgccgaggccctgcaaccgctgctg
ggcgcgggcaccgatgccgcgccggccgcggtcgagcccggtcataccggcgacctgttc
gccgcgccgcccgcggtcgccgtggctgccgccgcgcctgcggccggcatgcccgcgacc
ggcttccccggcgcccgtgtgcatctgctgcgcggctaccgccagcacgaaagcctgcaa
ctggcgccgcttgccgaggccgtgcgcgacggcgacgccgcccgcgcgctggccctgctg
cgcgacggcgccctggccggtatcgatttccacgaaggcagccccgacccgctggtcgtt
catcgcgaacgtctgctcgcccacgcccgcgccctggccgacgccgacggccccgccgac
gcgctcgcgatcgccggccgcctgcgcctgctcaccgccctgcgcgacggccccagcggc
gcccgcaccctcaacgcccgcatcgaggccctcatcgccgaagccggtggcggccgcggc
acgccgggccatggcacgcgcggtcacggcacatccggacacttccacggccaacccctg
ctgatcaccgagaacagctaccgccacggcctgttcaacggcgacatcggcgtctgcctc
gccgacgaccgcggcgtgctgaccgcgtggtttgccggaaacgcgcccgggagcgccgcg
gcaggcgacaccggcaacgacggtcccgtaccgccgcgcccgttccatcccgctgcgctg
ccagcgcacgaaagcgccttcgcgatgaccgtgcacaaggcccagggcagtgagttcgac
gaggtctggctgcaactgcccgcccgcgacacccgcgtgctgtcgcgcgaactggtctac
accggcctcacccgcgccaagacccgcctgcacctggccgcccccgccgacatcatcgag
accgcgctcgcccggcatgcgagccgggtgtcggggttggggtggcggttagggggcggg
ggtgggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (34)   

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