KEGG   Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_00281
Entry
Lm4b_00281        CDS       T00898                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase (beta subunit)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lmc  Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lmc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Lm4b_00281 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lmc03021]
    Lm4b_00281 (rpoB)
   03400 DNA repair and recombination proteins [BR:lmc03400]
    Lm4b_00281 (rpoB)
Enzymes [BR:lmc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Lm4b_00281 (rpoB)
Transcription machinery [BR:lmc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Lm4b_00281 (rpoB)
DNA repair and recombination proteins [BR:lmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Lm4b_00281 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: CAS04048
UniProt: C1KYJ3
Position
274654..278208
AA seq 1184 aa
MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFLDEGLREMFRDISPIED
FAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLINKETGEVKDQEVFMGDFP
LMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAK
DVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALLEIY
ERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAETLVDP
ETGEIIASKGDILDRRNLDQIIPNLENGVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEK
EINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGE
LTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNK
FGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSE
NLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVG
TGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSN
QGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSE
RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN
DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGD
ELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNP
LGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYD
GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLG
MDVKMLSADEEEIEMRDMDDDDFTNQNDAFNIVQPENAAAEKTE
NT seq 3555 nt   +upstreamnt  +downstreamnt
ttgtcaggacattcaggacatgatgtaaaatatggacggcatcgtacgcgtagaagtttt
gcgcgaatcagtgaagtacttgaattaccaaacttaattgagattcaaacagcttcttac
caatggttcttagatgaagggctacgtgagatgttccgcgatatttcgccaattgaggat
tttgcgggtaatttatctttagaattcattgattacgatcttggagaaccgaaatactcg
gtagaagaatctaagaaccgtgatgcaaactatgcggctccactacgcgtgaagttgcgc
ctaatcaacaaagaaaccggcgaagtgaaagaccaagaagtatttatgggtgatttcccg
ctaatgactgaaatgggtacgttcattattaatggggcagaacgtgttatcgtttcccaa
ttagttcgttctccaggtgtttacttcaatggaaaactagacaaaaatggtaaaaaaggc
tttggttctactgtcatccctaaccgtggggcttggcttgagtacgaaacagatgctaaa
gacgttgtacacgttcgtattgaccgtacacgtaaattaccagtaactgttttacttcgt
gcactaggctttggttccgatcaagaaattattgatttaatcggggacaatgactacttg
cgcaacacgcttgaaaaagacaacactgacaatgctgaaaaagcacttctagaaatttac
gaaagattacgtccgggtgaacccccaacagttgataacgctagaagcttactagtttct
cgtttctttgatccaaaacgctacgatcttgcaagcgttggacgttataaaatcaacaaa
aaattacatctgaaaaaccgtctattcaaccaaacattagcagaaactttagtggatcca
gaaactggtgaaattatcgcttctaaaggtgacattttggatcgtcgtaatttagatcaa
attattcctaatttagaaaacggtgtaggtttccgtacacttcgtccaactgatggagtt
atggaagatagcgtactcgttcaatctattaaaatctacgcaccaaatgatgaagaaaaa
gaaatcaacatcattggtaatgcgtatattgaagaaaacgtaaaacacatcacgccttct
gatattatttcatccattagctacttctttaacttgctacatggtgttggcgatacagat
gacatcgatcacctaggtaatcgtcgtcttcgttctgttggtgaacttttacaaaaccaa
ttccgtatcggtttatcccgtatggaacgtgtagttcgtgagcgtatgtctattcaagat
atgactacaattacaccgcaacaattgattaatattcgcccagtagttgcttctatcaaa
gaattctttggtagctcgcagttatctcagttcatggatcaaacaaatccacttggcgaa
cttacgcataaacgtcgtctttcagcgcttggacctggtggtttgacgcgtgaacgtgct
ggttatgaagtacgtgacgtgcattactctcactatggtcgtatgtgtccgattgaaacg
ccagagggaccaaacattggtttgatcaactccctttcttcctttgcgaaggtaaataaa
ttcggctttatcgaaacgccttaccgccgcgtagatcctgaaacaaaccgtgttactgat
aagattgattatctaactgcggatgaagaggataattacgtagtagcgcaagctaactcg
aaattagacgaacaaggtactttcacagaagaagaagttatggctcgtttccgttcagaa
aacttagcggtagaaaaagaacgtattgactacatggatgtatcgcctaaacaggttgta
tctgttgcgacagcatgtattccgttccttgaaaacgatgatagtaaccgtgcgctaatg
ggggcgaacatgcaacgtcaagcagttcctcttatgcaccctgaagctccatttgttgga
acaggtatggaacacgtatctgcaaaagactctggtgctgctgtaactgccaaacatgac
ggtattgtagaacacgttgaagctcgcgaaatctgggttcgtcgtgtatctctagtggat
ggcaaagaagtaactggcggaattgataaatatactttacgtaaatttgttcgttctaac
caaggtacttgttataaccaacgtccaaacgtagcggaaggtgaccgcgttgttaaagga
gaaatccttggtaacggtccatcaatggattccggtgaactagctcttggtcgtaacgta
ctagttgcattcatgacttgggatggttataactacgaggatgcgatcatcatgagtgaa
cgtcttgtaaaagatgacgtttatacttcgattcatattgaagaattcgaatcagaagct
cgtgatacaaaactcggacctgaagaaatgactcgtgatattccaaatgttggggaagac
gctttacgcgaccttgacgaacgtggaattatccgtgttggtgctgaagtaaaagacaac
gaccttctagttggtaaagtaacaccaaaaggagttaccgaattaactgcagaagaacgt
ttattacacgctatctttggtgaaaaagcacgtgaagttcgcgatacttcattacgtgta
cctcatggcggcggcggaatcgtgcttgacgtgaagatctttacacgtgaagcaggcgac
gaactaccaccgggtgtaaaccaattagtacgtgtttatattgtacaaaaacgtaaaatc
cacgaaggcgataaaatggccggacgtcacggtaacaaaggggttatctcccgtatttta
cctgaagaagatatgccatttatgccagacggaacacctgttgacatcatgcttaaccca
ctaggggtaccatctcgtatgaatatcggacaagtactagagctacacttaggtatggct
gctcgtgctttaggaattcacgttgcaacaccagtatttgatggtgcgaatgaagaagat
gtttggagcacagtggaagaagctggtatggcccgcgatgcgaaaacaattctttatgac
ggacgttctggtgaagcatttgataaccgtatctctgtaggtgtaatgtacatgatcaaa
cttgcccacatggttgatgataaacttcatgcgcgttcaactggaccttactctctagta
acgcaacaaccgcttggtggtaaagcacaatttggtggacaacgttttggtgagatggaa
gtatgggcactggaagcttatggtgctgcttatacacttcaagaaatcctaacgattaaa
tccgatgacgtggttggtcgtgtgaaaacttacgaagcgattgttaaaggcgaaagcgtt
ccagaacctggtgtgccagaatccttcaaagtactcatcaaagagcttcaaagtcttgga
atggatgttaaaatgctttccgcagacgaagaagaaatcgagatgcgtgacatggatgat
gacgactttactaatcaaaatgatgccttcaatatcgtacaaccggaaaatgcagccgct
gaaaagactgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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