KEGG   Leisingera methylohalidivorans: METH_16040
Entry
METH_16040        CDS       T02961                                 
Name
(GenBank) deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
lmd  Leisingera methylohalidivorans
Brite
KEGG Orthology (KO) [BR:lmd00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:lmd02048]
    METH_16040
Enzymes [BR:lmd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     METH_16040
Prokaryotic defense system [BR:lmd02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   METH_16040
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1RH-like_C
Other DBs
NCBI-ProteinID: AHD01994
UniProt: V9VWC7
Position
3125044..3128469
AA seq 1141 aa
MAVTGINSEDRLVQTTFAEHLETELGWDSVYAWNQETFGPDGTLGRKDTTEAVLLRDLRA
ALHRLNPDLPAPAIEDAIRSLTVYDVSRSMVQHNRDFYRMLRGGVPVTYRDAKGRQKSAR
AKVIDFDNALGANRFLTVRELKLTGMRTPNYNRRADLVCFVNGLPLVFIELKAVYKNIRA
GFDGNLRDYMDENVIAHAFHHNAFLIVSNGDGARYGSITSTWEHFNEWKRLDEADEGSVD
AERLLNGMLAHDRLLDLVENFILFDESKAGTARKVVARNHQVLGVNRAVASVARQEAIKA
EIPPGERLRHRVVELPLERKTPAKRKRGDQALLAAEPSLPSFVPEGPVDIIERAHPDLGR
LGVFWHTQGSGKSYSMAFFAEKVRRKVPGNFTFLLMTDRNDLDSQIYKTFVGCGVAGNDT
PRAASGDDLERILKENNQYVFSLIHKFNKDVDPKKPYSERDDIIVISDEAHRTQAGRLAR
NMRLALPNAAFIGFTGTPLFKQDQITKRIFGDYVSRYDFKRSEEDGATVKLVYENRGEKL
GVAKTNLNDRIAEKIEEAELDPDQAALLDKLLGKDYEVITADERLDKIAADFVEHCATRW
ESGKSLFVCIDKITCARMHQMIVPRWRAKAAEVRAAADAKQAEADAAADETLRLVLAEQA
QELAAQAMWLEETIVEIIISEAQNEVADFKKWGFDIIPHRALMKQGFNTGNGERIDAETA
FKNPEHPFRVAIVCAMWLTGFDVECLSTLYIDKPMKAHTLMQAIARANRVYPGKDFGLIV
DYNGMLASLRAALAQYALGDDGTGGEEIIAPIEERVQALLEAIEATEAHLRSLAFDPSVL
LGSKGFVRIKGLKDAVEAVYSTDEAKRRFEILARQVFIRFKALLMEPSAWAHAERHDNIE
AIYKKLTERRDTADVTELLKELHRIVNEAIRTQAPGDDQAEGLTFDLSQIDLEKLRDEFA
KKVRRKATALQDIRDIVEQKLAEMLARNPARMDYQVKYEAIIADYNREKDRTTIEETFRR
LVELVNSLDEEQKRATKEGLGEDELALFDLLLKDNLEKTSRERVKQASRDLLASIKARLA
ELDRFWEKEQTKADVEVFILDEVFANLPSPPFTPDEKKALAASVYAHVWQQAVNGGFAQA
A
NT seq 3426 nt   +upstreamnt  +downstreamnt
atggcggttaccgggatcaatagcgaggacaggctggtccagaccaccttcgccgagcac
ttggaaacagagctgggttgggacagcgtatatgcctggaaccaagagaccttcggtccg
gacggcacgcttgggcggaaggatacgaccgaggccgttctgctccgtgaccttcgtgcg
gcgctgcaccgtctcaacccagatttgcctgctccggcaattgaggacgcaatccgaagc
cttaccgtctatgacgtcagccggtcgatggttcagcacaaccgcgatttctatcgtatg
ctgcgcggcggcgtacccgtcacgtatcgcgatgctaagggccgacagaaatccgctcgt
gccaaggtgatcgacttcgacaacgcgctcggcgctaatcgcttccttaccgtgcgcgag
ttgaaattgaccggtatgcggacgcccaactacaaccgtcgcgctgatctggtctgcttc
gtcaacggcctgccgctggtcttcatcgagctgaaggccgtctacaagaacatccgagcc
gggtttgatggcaacctgcgcgactacatggacgaaaacgtcatcgcgcacgccttccat
cataacgccttcctaattgtctcgaacggtgatggcgcccgatatggctcgattacgagc
acttgggagcatttcaacgagtggaagcggctagatgaggcggacgaaggcagcgtggat
gcggagcggctgttgaatggcatgcttgctcatgatcgattgctcgatctggtcgaaaac
ttcatcctgttcgacgaaagcaaggcgggtacggcacggaaggtggttgccagaaatcac
caggttttgggcgtgaaccgtgcggtagcctccgtcgcgaggcaagaggcgatcaaggcc
gagatcccgcccggtgagcgcctgcgccaccgcgtggtggagttgccgctggagcgaaag
acaccagccaagcgcaagaggggtgatcaagcgcttctagcggcagaaccttcacttccg
tccttcgttcccgaaggtcccgtcgacattatcgaacgggcgcatcccgatttaggtcgt
ctgggagtgttctggcacacgcagggcagtggcaagtcctactcgatggcgttcttcgcc
gagaaggtgcggcgcaaggtgccgggtaatttcacattcctgctgatgaccgaccggaat
gatctcgacagccaaatctacaagacctttgttggctgcggcgtcgcgggaaacgacacc
ccgcgcgcggcatccggcgatgatcttgaacggatcctgaaggaaaacaaccagtacgtt
ttcagcctgatccacaagttcaacaaggacgtggaccccaagaaaccctacagcgagcgc
gacgacattatagtgatttctgacgaagcccaccgcacgcaagcggggcggctcgctcgt
aatatgcgcctggcgctgcccaacgctgccttcatcggcttcactggcacgcccttattc
aaacaggaccagatcactaagcgcatcttcggagattatgtctcgcgctacgacttcaaa
cgctccgaggaggatggcgcgaccgtcaagctagtctatgagaaccggggcgagaagtta
ggggtcgccaagacgaacctgaacgatcggatcgccgagaagatcgaagaagcggagctc
gacccagatcaggcggcgctcctcgataagctgcttggaaaggactacgaggtcatcacc
gcggatgagcggctcgacaagatcgcggccgatttcgtggagcactgcgcgacgaggtgg
gagtccggaaaatccctattcgtgtgcatcgacaagatcacctgcgcccggatgcaccaa
atgatcgtcccacgctggcgggcgaaggctgcagaagtcagggcggccgccgacgccaag
caagccgaagcagatgccgctgctgatgaaacccttcgccttgtactcgcggagcaagcg
caagaactggctgcgcaggcaatgtggctcgaggaaaccatcgttgagatcatcatcagc
gaggcgcagaacgaggtcgcggacttcaagaaatgggggttcgacatcatcccgcaccgc
gccttgatgaagcagggcttcaatacagggaatggagagcggattgatgctgagacggct
ttcaagaaccccgagcacccgttccgcgtcgcaatcgtctgcgcgatgtggctgactggt
tttgacgtggaatgcttgtcgacgctctatatcgacaagccgatgaaggcgcacacgctg
atgcaggccatagcgcgggcaaacagggtgtatcctggcaaggacttcggcctgatcgtc
gactacaacgggatgctagcaagcttgcgtgccgcgctcgcccagtatgcgctaggcgat
gatggcacgggcggtgaagaaatcattgcgcccattgaggagcgcgtacaggctctgcta
gaagctatcgaggcgaccgaggcgcatttgcgcagcctcgccttcgatccaagtgtactg
cttggctcgaagggctttgtgcgcatcaagggcctcaaggacgccgtggaagccgtctat
tcgacggacgaggcaaagcgccgcttcgagattcttgcacgacaggtgtttatccgcttc
aaggcgctgcttatggagcccagtgcgtgggcacacgccgaacgacacgacaacattgaa
gcaatctacaaaaaactgaccgagcggcgcgacacggctgatgttacagagctgttgaag
gagctgcaccggatcgtcaatgaagccatccgaacgcaggcaccaggggacgatcaagcc
gaggggctgaccttcgacctgagccagattgatcttgagaagctgcgcgatgaatttgca
aagaaggtcagacgcaaagcgactgcgcttcaggacatccgcgacatcgtcgaacagaaa
ctcgccgaaatgctggcgcgaaatcccgctaggatggactatcaggtgaagtacgaagcg
atcatcgccgactacaatcgggagaaagaccgcaccaccatagaagaaacgttccgccga
ctggtcgagctcgtcaacagtctggacgaggaacagaaacgcgcaacgaaggaagggctt
ggcgaggatgagctcgcgctcttcgacctgctgctcaaggataatttggaaaaaacgtct
cgtgagcgggtgaagcaagcgagccgcgacctcttggcgtctataaaagcgcgcttggcc
gaactcgatcgcttctgggagaaggagcagaccaaggctgatgtcgaggtcttcatcttg
gacgaggtcttcgcaaacctaccgtcaccgccgttcacgcccgacgaaaagaaagccctt
gctgcaagcgtctacgcacatgtgtggcaacaggccgtgaatggtggcttcgcacaggcg
gcataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (44)   

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