KEGG   Leishmania mexicana: LMXM_28_0120
Entry
LMXM_28_0120      CDS       T02288                                 
Name
(RefSeq) DNA-direcetd RNA polymerase II, subunit 9,putative
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
lmi  Leishmania mexicana
Pathway
lmi03020  RNA polymerase
lmi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lmi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LMXM_28_0120
  09124 Replication and repair
   03420 Nucleotide excision repair
    LMXM_28_0120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lmi03021]
    LMXM_28_0120
   03400 DNA repair and recombination proteins [BR:lmi03400]
    LMXM_28_0120
Transcription machinery [BR:lmi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     LMXM_28_0120
DNA repair and recombination proteins [BR:lmi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      LMXM_28_0120
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C zf-Sec23_Sec24 HNH_5
Other DBs
NCBI-GeneID: 13450380
NCBI-ProteinID: XP_003876845
UniProt: E9AZH3
Position
28:33376..33798
AA seq 140 aa
MEAEEITQVSIGNATTAPMLFCSRCNNLLYPECDDDNYSMTWRCNYCKTTEQHDDCKLVH
VMNLKMKADAIGGMDLIAEFASDPTAQRDPDKPCPKCGKKGVACFVNPLGQPQEDMTLYF
ACSDTVCRHVWKGAAVEDQN
NT seq 423 nt   +upstreamnt  +downstreamnt
atggaggcggaggagatcacccaggtgagcatcggcaatgctaccaccgcaccgatgctc
ttctgctcacgctgcaacaacctcctttaccccgagtgtgacgatgacaactacagcatg
acgtggcgctgcaactactgcaaaacgactgagcagcacgatgactgcaagcttgtccac
gttatgaacctgaagatgaaagcagacgcgatcggtggcatggatctgattgccgagttc
gccagcgacccaaccgcgcagcgtgatcctgacaagccgtgccccaagtgcggcaagaag
ggtgttgcttgctttgtgaacccgctcgggcaaccgcaggaggacatgacactttacttt
gcttgctctgatacggtgtgtcgccatgtgtggaagggcgctgccgtcgaggaccagaac
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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