KEGG   Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1856
Entry
LMR479A_1856      CDS       T03180                                 
Symbol
rlmCD
Name
(GenBank) methyltransferase of m5U747 and m5U1939 in 23S RNA
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
lmr  Listeria monocytogenes R479a (serotype 1/2a)
Brite
KEGG Orthology (KO) [BR:lmr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lmr03009]
    LMR479A_1856 (rlmCD)
Enzymes [BR:lmr01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     LMR479A_1856 (rlmCD)
Ribosome biogenesis [BR:lmr03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    LMR479A_1856 (rlmCD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Met_10 Methyltransf_25 PrmA Cons_hypoth95 RrnaAD MTS Methyltransf_15 Methyltransf_32 Methyltransf_11 TPMT DOT1 DUF2023 Methyltransf_23
Other DBs
NCBI-ProteinID: CDM17075
Position
complement(1828390..1829751)
AA seq 453 aa
MEASLLKKNQSIELTIEDLTHDGSGVGKIDGYPFFIPNTLPGEKVTAKIIKLNKNYGFAR
MENIETVSANRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPET
LGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREIL
AKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTS
IVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAID
AAELTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFET
GKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMK
ILTDGGYVAKKVQPVDMFPMTTHIEAVTVLHLN
NT seq 1362 nt   +upstreamnt  +downstreamnt
ttggaagcatcccttttaaaaaagaaccaatctattgaacttactattgaagatttaacg
catgacggcagtggggttggcaaaattgacggatacccatttttcattccaaatacgtta
cctggcgaaaaagtgacagcaaaaataataaaattaaataaaaattatggttttgctcgg
atggagaatattgaaactgttagtgcaaatcgtgtagagcctccttgtgcggtttattcc
aaatgtggcggttgtagtttgcaacatttaagctacgatggccagcttgaattcaaacga
aatcaagtggaagaaacgatgaaacgcattggtaaactaaacgtagaagttcctgaaacg
ctaggtatggaaaacccgtggcgctaccgtaataaatcacaagtaccggtaggttttgtt
aatggtaagttaacagctggcttttatcaaaaaagaagccatgccattattgatatgtcg
acctgtttaattcacaatgagcaaggtgattttgctgttcaaaaaacacgtgaaatccta
gctaaatacggaacagagccttatgatgaacaaacaggaaaaggcgatatccgccatatt
atgacaagatttgcgcatacaactggacagttaatgattgtccttgtaacaacaaaagaa
cgtatgccttttaaagaagaaattgtacgtgatttggtcgaacaactagaattaacttct
atcgttcaaaatattaacccacataaaacgaatgtgatttttggagatcgtacaaaaaca
ctttggggaaaagatattattgaagacacgattcatggtattcgttttgcaatttcggct
cgttcattttatcaagtgaatccgctccaaacagaagttttgtatcaacaagcaatcgac
gcggctgagttaacaggtgaagaaacagtgattgacgcttattgcggcattggttctatt
tccctttgtctcgcgaaaaaagccaagcatgtctatggggtagaaattgtggatcaagcg
atacaagatgctcgtgcaaatgcagaactcaatgaattagcgaatacaacttttgaaaca
gggaaagcagaagaggttattccggcgtggtacaaagctggcattgtagcagacgtctta
gttgtcgatccaccacgaaaaggctgcgatgaaaagttacttgaaactattttggcaatg
aaaccaaagaaagtagtatatgtttcttgtaatccagggacattagcccgagatatgaaa
atattaacagatggtggctatgtagcgaaaaaagtccaaccagtagatatgtttccaatg
acgacacatattgaagctgtgactgttttacatttaaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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