KEGG   Leptotrichia sp. oral taxon 847: AXF11_01355
Entry
AXF11_01355       CDS       T04653                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lot  Leptotrichia sp. oral taxon 847
Pathway
lot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AXF11_01355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lot03019]
    AXF11_01355
   03009 Ribosome biogenesis [BR:lot03009]
    AXF11_01355
Enzymes [BR:lot01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AXF11_01355
Messenger RNA biogenesis [BR:lot03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AXF11_01355
Ribosome biogenesis [BR:lot03009]
 Prokaryotic type
  rRNA helicases
   AXF11_01355
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_30 Flavi_DEAD
Other DBs
NCBI-ProteinID: AMD94371
UniProt: A0A109W6Y6
Position
complement(305452..307131)
AA seq 559 aa
MQKFEDFGLSTEMLNALSKKGFEEPSEIQKLVLPELLKERTHLIGQAQTGTGKTAAFSIP
ILETIKSDKTVKALILAPTRELANQVADEIYSLKGEKNLKVLAVYGGASIENQIKRLKSG
VDIVVGTPGRVMDLMKKKVLKVDNLDYFVLDEADEMLNMGFIEDIEEILKKTNDGKKMLF
FSATIPKQILAIAKKFMPEYKLLKVPKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQD
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTVLVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGIAITFVTPREASKLAQIKRITK
TDIKREDIPNVEEILNAKKEALIAYIEEIIKEDDHSAYDELANDLLEGRDPKQVLASVLR
HVYEDEFLPENYSEIQDVKVKIADKTRLFIALGSKDGYNVGRLLDLLHKKAKTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDSKPLVEEATGNRKSGGNGKKSSSKKSGRKKS
SSKKTSSKKDKKNKKKSKK
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgcaaaaatttgaagattttggattaagcacagaaatgcttaatgcactaagtaaaaaa
ggattcgaggaaccaagcgaaatacaaaaattggtacttcctgaattattaaaagagaga
acgcacttaataggacaagcacagacaggaacaggaaagacggcggcatttagtatccca
atcctagaaactattaaatctgataaaactgttaaagctttaatcttagcacctacaaga
gagcttgcaaatcaagtggcagatgaaatttattcattaaaaggtgaaaaaaatttaaaa
gtgttagcagtttacggtggtgcatctatcgaaaatcaaattaaaaggctaaaatctgga
gttgacattgttgtcggaacgcctggaagagttatggacttgatgaagaaaaaagtctta
aaagttgacaatttggattatttcgtattagacgaagcggatgaaatgttaaatatggga
tttatcgaagatattgaagaaatattaaaaaagacgaacgacgggaaaaaaatgttgttt
ttctcagccacaatccctaaacaaattttggcaatagctaaaaagtttatgccagagtat
aaattattaaaagttccaaaaaaggaattgactacaaatttaacagaacaaatttattat
gaagttaaacaggaagataagtttgaagcgctatgtagagttttggactacgagcaggat
ttttacggaattgtattttgtagaacaaaatcagaagttgacgatgttacaaataaatta
aaagctagaaattacgatgctgaatgtattcatggcgacatcactcaagcgttaagacaa
aaagcgttggatttattcaagaaaaaaatattaacagtccttgtggcaacagacgttgca
gcaagaggaatagatgtgagtaacttaacacacgtaatcaattactcaataccgcaggaa
gcagaatcttatgtccacagaattggaagaactggaagagctggtcaaaaggggattgca
attacttttgtaacacctagggaagctagtaaattggcacaaattaaaagaattacaaaa
accgatatcaaaagagaagatataccaaatgtggaagaaattttaaacgctaaaaaagaa
gcattaatcgcctatattgaagaaattataaaagaagatgaccatagtgcttacgatgaa
ttggcaaatgatttgcttgaaggaagagatccaaaacaagttttggcatctgtattaaga
catgtctatgaagatgagtttttacctgaaaattacagtgaaattcaagatgtgaaagtt
aaaattgcggataaaacaagattatttatcgcacttggttcaaaagatggctataatgtg
ggaaggttattagatttacttcataaaaaggcaaaaactccaggaagaaaagtaaaagat
gtaaaaattatggataaatattcattcattacagtgccactacaggaagcggaatacatt
atgagagcactaaattccaaaaaagattccaagcctctagttgaagaagctacaggtaat
agaaaaagtggcggaaacggaaaaaaatcctcgtcaaaaaaatctggaagaaaaaagtca
tcaagtaaaaaaacttcttcaaaaaaagataaaaaaaataagaaaaaatctaaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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