KEGG   Lysinibacillus pakistanensis: GDS87_00025
Entry
GDS87_00025       CDS       T06280                                 
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
lpak  Lysinibacillus pakistanensis
Brite
KEGG Orthology (KO) [BR:lpak00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpak03032]
    GDS87_00025 (gyrB)
   03400 DNA repair and recombination proteins [BR:lpak03400]
    GDS87_00025 (gyrB)
Enzymes [BR:lpak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     GDS87_00025 (gyrB)
DNA replication proteins [BR:lpak03032]
 Prokaryotic type
  DNA Topoisomerases
   GDS87_00025 (gyrB)
DNA repair and recombination proteins [BR:lpak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      GDS87_00025 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 Phasin_2
Other DBs
NCBI-ProteinID: QGG49449
Position
4246..6180
AA seq 644 aa
MKAVAIENEGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDE
ALAGFCTDIKVTIEKDNWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYK
VSGGLHGVGASVVNALSVETIVQVHREGHIHEIKFERGQTVQQLTIIGDTDHNGTTTRFK
ADPEIFKETTVYEYDILAHRIRELAYLNRGIKITIADEREGEERSTTYHYEGGIRSYVEH
LNQSKEPIHDPIDVLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTAL
TRVINDYARKSSLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQIT
NSLFSDGFERFMLENPTVARKIIEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLAD
CSSTNPAECEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRA
MITAFGTGIGEEFNLEKTRYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIA
QPPLYQVKQGKHVEYCYDDETLKAILERLPKMPKPSVQRYKGLGEMNAEQLWETTMDPEH
RTLLQVELDDAIKANQAFERLMGDEVEPRRQFIEENAVYANLDI
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaaagccgtggctatagagaacgaaggtttacaaaatcaagcttatgaggccgatcag
atacaggtattagaaggtttagaagctgtacgtaaaagaccaggtatgtatatcggttca
acaagttctaaagggcttcaccacttagtatgggaaattgttgataatagtattgacgag
gcactagcaggattttgtacagatataaaagtaacgatagaaaaagacaattggattcga
gtagaagataatggtcgtggtattccagtaagtattcaagaaaaaatgggtaagcctgct
gtagaggttattatgacagtactgcatgcgggtggtaagttcggtggtggtggctacaaa
gtatctggtggacttcatggtgttggggcatctgttgtgaatgcattatcagttgaaacg
attgttcaagtacatcgtgaaggtcatattcatgagattaaatttgagcgcggtcaaact
gtacaacagctaacaattattggagatacagaccataatggcacaactacacgttttaaa
gccgaccctgaaatatttaaagaaaccactgtctatgaatatgacattttagcacatcgt
attcgtgaattagcttatttaaatcgtgggataaagattacgattgctgatgagcgtgaa
ggtgaggagcgttctactacatatcactatgaaggtggtattcgttcttatgtagagcat
ttaaatcaatcgaaagagcctatccatgatccaattgatgttcttggagaaaaggatggt
atttcagttgaaattgctatgcagtataatgctggattctcctctaatattttttcattt
gctaataatattaatacgtatgaaggcggtacacatgaatctggttttaaaacagccctt
acacgtgttattaatgattacgcccgcaaaagcagtctgttaaaagaatcagatgctaat
cttactggtgaggatgttcgtgaggggttaacagcaattgtatctgttaagcaccctgat
ccacagtttgaggggcaaactaaaactaaacttggtaactctgaggtaagccaaattacc
aattctctattctcagatggttttgaacgttttatgttagagaatccaacagttgctcgt
aaaattattgaaaaaggtttaatggctgctcgtgctcgtgtagctgcaaagaaagcacgt
gaatttacacgccgtaaaaatgctcttgaagtatctagcttacctggtaaattagcagat
tgctcttcgacaaatccggcagaatgtgaaatttatatcgttgagggtgattccgctggt
ggttctgctaaatctggacgtgaccgtcattttcaagcaatcctaccgttacgtggtaaa
atcttgaatgttgaaaaagcaagattagataaaattttatcgaatgctgaaatacgtgca
atgattacagcatttggtacaggtattggtgaagaatttaatttagaaaagactcgttac
cataaaattatcattatgacagatgccgatgttgatggtgcacatattcgtacattattg
ctaacattcttcttccgtttccttcgtcctttgatagaggcaggctatatttatattgcc
cagccaccactttatcaagtaaagcagggcaaacatgttgagtattgctatgatgatgaa
acattaaaggctattcttgagcgactaccaaaaatgccaaagccaagtgtacagcgttat
aaaggtttaggtgaaatgaatgcagaacagctttgggaaacgacaatggatcctgagcat
cgtacattattacaagtagaattagatgatgctattaaagcaaaccaagcatttgagcgc
ttaatgggcgatgaagttgaacctcgtcgtcaatttattgaagaaaatgctgtatacgct
aatttagatatttaa

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