KEGG   Lysinibacillus pakistanensis: GDS87_00220
Entry
GDS87_00220       CDS       T06280                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
lpak  Lysinibacillus pakistanensis
Pathway
lpak03030  DNA replication
lpak03430  Mismatch repair
lpak03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lpak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GDS87_00220 (dnaX)
   03430 Mismatch repair
    GDS87_00220 (dnaX)
   03440 Homologous recombination
    GDS87_00220 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpak03032]
    GDS87_00220 (dnaX)
   03400 DNA repair and recombination proteins [BR:lpak03400]
    GDS87_00220 (dnaX)
Enzymes [BR:lpak01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GDS87_00220 (dnaX)
DNA replication proteins [BR:lpak03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     GDS87_00220 (dnaX)
DNA repair and recombination proteins [BR:lpak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     GDS87_00220 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNA_pol3_gamma3 RuvB_N AAA_22 AAA_5 AAA_30 AAA_14 AAA_19 AAA_16 Mg_chelatase Rad17 AAA_7 AAA_24 TIP49 DnaX_C DEAD AAA_assoc_2 AAA_18 PIF1 DNA_pol3_delta_C TsaE RNA_helicase nSTAND3
Other DBs
NCBI-ProteinID: QGG49476
Position
49304..51091
AA seq 595 aa
MTYQAFYRVYRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAK
ALNCERAPSNEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRY
KVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLST
NDIIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLV
TGSISQEVFYDLAEALKVKDVAKMLALLEQLIADGKDPLRLSEDLITFFRDLLLLQTSDE
LTELLELVSPEERVFTLAHDFAPDLLYGYIDILAKTQQEMRFSHHTKIYLETALLKMVQF
SGGLVSQTTSTVEAALSPELAQKIVALEQTVQQLSAQLQAGAPVQQMQAPKEQRPRAKSP
NGYKAPTGRIQEVLKDATKQDVHRIKSVWAQALNQMQKSQSALLAEAEPVAASSSAFVLK
FKYDIHCQMVADNQSLKAQFTQLIAGQTGTMYEMLCTPEETWLKLREEFIRDHGLQQQKK
SQTVSEQEMELLEPPPAEMPDEPFIDDAQPLASQDPLVTEAEKLFGKDFIEIVED
NT seq 1788 nt   +upstreamnt  +downstreamnt
ttgacgtatcaagcattttatcgtgtgtatcgaccgcaatcatttcgagaaatgtctggt
caagcacatgtcaaaagaacgctacaaaatgctctcctagcaaacaaaaccacacatgct
tatttgttttctggcccaagaggaacggggaaaacaagtacagctaagatttttgcaaaa
gctttaaattgtgagcgagcaccatccaacgagccatgtaacgaatgtgccacttgtata
agcattacagatgggtcgcaccctgatgtgattgaatttgatgcagcatctaattctaga
gttgaagaaatacgtgatattatcgagaaagttcgctttgctcctgctagtagtagatat
aaagtgtatattatcgatgaagtgcatatgctttctacaagtgcttttaatgcactttta
aaaacattagaagaaccacctccacatgctgtttttattttggcgacaacagagcctcat
aaattgcctgcaaccattatctcacgttgccaacgctttgatttcaaacgactatcaact
aacgatattatcgaacgcatgaaggttgtattagaggacattgagctaccgtatgaggaa
caaggtttgaaggtaattgcacaatctgctgctggcggtatgcgtgatgcattgagttta
ttagatcaggttgtctcctttagtggagagaagctaaagcttgaggatacattacttgta
acaggttcgattagtcaggaagttttttatgacttagcagaagccttaaaagtaaaagat
gttgctaaaatgcttgctttattagaacagcttatcgcagatggcaaggatccacttcgt
ctttcagaggacttgattacatttttccgtgacttattattgctacaaacaagtgatgaa
ttgaccgaactattagagctagtttcgccggaagaacgtgtatttacattagcacatgat
tttgcaccagacttgctatacggctacatagatattttagcgaaaacacagcaagaaatg
cgattctcccatcatacaaaaatctatttagaaacagcattacttaaaatggtacagttt
tcgggaggactagttagtcaaacaacttctacagttgaagcagcattgagcccagagcta
gctcaaaaaatagttgcacttgagcaaacggtgcaacaattgtcagcacaactacaggca
ggagctcctgtgcagcagatgcaagcacctaaagaacaacgaccacgagctaaaagtcca
aatggctacaaagcaccgacagggcggattcaagaggtgctaaaagatgcaacgaaacag
gatgttcatcggattaaatcagtttgggcccaagcgttaaaccaaatgcaaaagtcacaa
tctgctcttttagcagaagctgaacctgttgcagcatcttcaagtgcttttgtgttaaaa
ttcaagtatgatattcattgtcaaatggttgctgataaccaatctctaaaagctcaattc
acacaattaattgctgggcaaactggtacaatgtatgaaatgctttgtacccctgaagaa
acgtggttaaaattacgtgaagagtttattcgtgatcatggtttgcaacagcagaaaaaa
tctcagacagtgtccgagcaggagatggaattactagagccaccaccggcagaaatgcct
gatgagccgtttatcgatgatgctcagccacttgcctcacaggatccacttgtgacagag
gcggaaaagttgtttggtaaagattttatagaaattgtggaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (24)   
   Pfam (24)   
All databases (35)   

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