KEGG   Lysinibacillus pakistanensis: GDS87_16700
Entry
GDS87_16700       CDS       T06280                                 
Name
(GenBank) ATP-dependent RecD-like DNA helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lpak  Lysinibacillus pakistanensis
Pathway
lpak03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lpak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GDS87_16700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpak03400]
    GDS87_16700
Enzymes [BR:lpak01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GDS87_16700
DNA repair and recombination proteins [BR:lpak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GDS87_16700
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 AAA_22 DEAD AAA_16 PIF1 AAA_12 UvrD-helicase AAA AAA_28 TsaE nSTAND3 T2SSE NTPase_1 AAA_5 SLFN-g3_helicase AAA_17 AAA_18 Zeta_toxin
Other DBs
NCBI-ProteinID: QGG52472
Position
complement(3471472..3473895)
AA seq 807 aa
MAENLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQ
MDEQYRFTGLLRQHPKYGVQFQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEK
LGANALRLILEDPNVLDSVPRLSAEKKEVIHRTIEQNLGLERVMIQLNEWGFGPQLGMKI
YQTYRTDAIELLTENPYRLIEDVEGVGFVRADELGAKLGITGNHPDRIKAAILHILNAAA
LSEGHVFLDAEQVLPLVKDMLEQSQREEIPFEAISKACIELREESKICGEETRLYLPSLY
FSEVGIASKIVSLIERNKKAEHFSRDEIRKAIGETEDLLHVTYAETQANAIEQALNSAAM
ILTGGPGTGKTTVVRGIVEVYAKLHGLSLNPKEYAQKEEPFPIILCAPTGRAAKRLSEST
ELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEEVQVVFV
GDQDQLPPVGPGQVLKDLLASHQIPTVELTEVYRQAEGSTIIELAHQIKRGTIPNDLSVK
TSDRSFIKASSDQVASVVTQVVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELIN
PNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMGEVISIIKAKETIEKQDLLVV
SFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPEVLADGLQRTDDLQRFTSLRARLNPMDIAEEITEKEAVSVEIVEEPIKDV
KLTVETEPLIHPMIGMDGVSPYDFLDD
NT seq 2424 nt   +upstreamnt  +downstreamnt
atggctgagaatcttgatttatttgaactaaataaattttttatactcggacgtccaatc
gtctctatctttcataatgctcaaaatatgtattcgattgttcgtgtgaaaattcaagag
actaatttacaatatgaagataaagaaatcattgttgtcggctattttccgccattacaa
atggatgaacaatatcgttttacaggtttattgagacagcatccaaaatacggtgtacaa
tttcaaattgagacgtttaccaaagaggtaccagcgacagagcaaggaatcattcattac
ctatcaagtgatttatttgttggtatcggaaaaaaaacggctgaaacaattgtagagaaa
cttggagccaatgctctacgtctaattttggaggacccaaatgtgcttgatagtgtccct
cgtctatcagccgaaaaaaaagaggttatccaccgtacaatcgaacaaaatcttggtctt
gagcgagtaatgatccagctaaatgaatggggatttggacctcagctcggtatgaaaatt
taccaaacatatcgcactgatgccattgagcttcttacagaaaatccatatcgtctcatt
gaagatgtcgaaggtgtgggattcgttcgtgcagatgagctaggtgcaaaattagggatt
actggtaatcatccagaccgtattaaggccgctattttacatattctaaatgcagcagct
ttatcagaagggcatgtgtttttagatgctgagcaagttttgcccttagtaaaagatatg
ctggagcaaagccaacgagaggaaataccatttgaggcaatatcaaaggcctgtattgaa
ttgcgtgaggaaagtaaaatttgtggggaagaaacaaggctgtatttaccgtctctctat
ttttcagaagtaggaatcgcctctaaaatagtgtcattaattgaacggaataagaaagct
gagcattttagtagggacgaaattcggaaagcgattggagaaacagaggacttactccat
gtgacctatgccgaaacacaggccaatgctattgaacaggccttaaactcggctgctatg
attttaacaggtggtccaggtactggtaaaacaacggttgtacgaggaatagtggaagta
tatgcaaagcttcatggtttatcattaaatccaaaggaatatgcgcaaaaagaagaaccc
tttcccattattttatgcgctcctacaggccgtgcagctaagcgtttatcggaatcaaca
gaacttcctgcaatgaccattcatcgattattaggatttactggacaggaaaaggaagag
gaaacagagcgtgaagttacaggaaagctcatcattgttgatgaaatgtcgatggtggat
acttggcttgctcatcaattattgaaagctctacatgaggaagttcaggttgtatttgtg
ggtgatcaggatcagcttcctccagtaggacctggacaggtgttaaaggatttattggcc
tcgcatcaaattccaactgtggaattaactgaagtgtatagacaggctgagggctcaact
attattgaacttgcccatcaaattaaacgcggtacaatcccaaatgatttatcggtaaaa
acgtctgaccgctcttttattaaagcctcctcagatcaagtagcaagtgttgttacacag
gttgtaaagagtgcagttgcgaaaggacaagaaattcgcaatattcaggtgttagcacca
atgtacaagggaccagcaggtattgataacctgaataaaatgatccaagagcttataaat
ccaaacgatactggtactagaaaagagcttgtctttggtgatgtaacctatcgtataaag
gataaagtattacagcttgtcaatcagccagaaagcaatgtttttaatggagatatgggt
gaagtcatcagtattatcaaggcgaaggaaactatcgagaaacaggatttacttgtcgtt
tcatttgacggcattgaagtaacctatcagcgcagtgacctcaatcaattgacactcgcc
tattgttgttccattcataaatcacaaggctcggaatttcagacagtaattatgccagta
gttcgaggttattctaaaatgctgcgtcgtaatctgctatatactggtataacccgtgcg
aaaaactttctgattttatgtggcgagccagaagtgctcgctgatggcttacagcgtaca
gatgatctacagcgctttacttctttacgtgcaagacttaatccaatggatattgcagag
gaaataacagaaaaagaagccgtatcagtggaaatagttgaagagccgataaaagatgta
aagttaacggttgaaacagaaccgctgatccatccaatgattggaatggacggggtttca
ccgtacgattttttagatgactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (24)   
   Pfam (24)   
All databases (32)   

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